View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13641_high_6 (Length: 362)
Name: NF13641_high_6
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_high_6 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 269997 - 270341
Alignment:
| Q |
18 |
actatgacaaccttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctct |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
269997 |
actatgacaaccttcacacttcacaaagaaacagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctct |
270096 |
T |
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| Q |
118 |
tttactatcgtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcata |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270097 |
tttattatcgtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcata |
270196 |
T |
|
| Q |
218 |
ccgatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270197 |
ccgatggcggccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaa |
270296 |
T |
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| Q |
318 |
aaagaaccaacggttgaagttatgaacactgttgtttctgctatt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270297 |
aaagaaccaacggttgaagttatgaacactgttgtttctgctatt |
270341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 17589377 - 17589035
Alignment:
| Q |
20 |
tatgacaaccttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttt |
119 |
Q |
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|||| |||||||||| ||||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||||||||| | |||||||||||| |
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| T |
17589377 |
tatggcaaccttcacccttcacaaagaaaccgttcaatcatggttacctctacatagaactcacatagtcttccacttcatatgcattttgtttctcttt |
17589278 |
T |
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| Q |
120 |
tactatcgtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcatacc |
219 |
Q |
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||||| |||||||| ||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||| | || |
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| T |
17589277 |
tactaccgtatcaaaaatttatttatttcatatccatggcttctaatgacattagctgagattattctatcatttatgtgggttttcaaccaagcgttcc |
17589178 |
T |
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| Q |
220 |
gatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaa |
319 |
Q |
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| ||||| ||||||| ||| || || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17589177 |
gttggcggccggtgactcgttcagtgatgaccgagaaattaccggctgaagagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaa |
17589078 |
T |
|
| Q |
320 |
agaaccaacggttgaagttatgaacactgttgtttctgctatt |
362 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17589077 |
agaaccaacggtagaagttatgaacactgttgtttctgctatt |
17589035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 11613 - 11950
Alignment:
| Q |
25 |
caaccttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttacta |
124 |
Q |
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|||||||||||||||||||||||| ||| ||| |||| ||||||||||| ||| | ||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
11613 |
caaccttcacacttcacaaagaaacagttcaaccatggttacctctaagaagagcttacataatcttccacttcacatgtgtcttgtttctcttttacta |
11712 |
T |
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| Q |
125 |
tcgtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatgg |
224 |
Q |
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||||||| |||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||| ||| ||| |
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| T |
11713 |
ccgtatcagcaatttgtttatttcatatccatggtttctaatgacaatagctgagattattctatcatttttgtggtttttcaaccaagcattccgttgg |
11812 |
T |
|
| Q |
225 |
cgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaac |
324 |
Q |
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| | ||| | ||| || || ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11813 |
aggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaac |
11912 |
T |
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| Q |
325 |
caacggttgaagttatgaacactgttgtttctgctatt |
362 |
Q |
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|||||||||| ||||||||||||||| ||||||||||| |
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| T |
11913 |
caacggttgatgttatgaacactgttatttctgctatt |
11950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 16386225 - 16385883
Alignment:
| Q |
20 |
tatgacaaccttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttt |
119 |
Q |
| |
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|||| |||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| ||||||| | ||||||||||||||||||||||||||| || |
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| T |
16386225 |
tatggcaaccttcacacttcacaaagaaacagttcaatcatggttacctctaagcagaactcacataatcttccacttcatatgtgtcttgtttctcatt |
16386126 |
T |
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| Q |
120 |
tactatcgtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcatacc |
219 |
Q |
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||||| |||||||| ||||| | || |||||||||||| |||||||||||||||||||||||||| | ||| | ||||||||| | ||||||||| || |
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| T |
16386125 |
tactaccgtatcaataatttattcatttcatatccatggtttctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattcc |
16386026 |
T |
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| Q |
220 |
gatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaa |
319 |
Q |
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| T |
16386025 |
gttggcggccgataactcgatcagttatgaccgagaatttaccggccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaa |
16385926 |
T |
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| Q |
320 |
agaaccaacggttgaagttatgaacactgttgtttctgctatt |
362 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
16385925 |
agaaccaactattgatgttatgaacactgttgtttctgctatt |
16385883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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