View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13641_low_10 (Length: 207)
Name: NF13641_low_10
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_low_10 |
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| [»] scaffold0283 (2 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 13338 - 13374
Alignment:
| Q |
53 |
gatatgatacgatacaaaccaaaacaaacaacaggag |
89 |
Q |
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| T |
13338 |
gatacgatacgatacaaaccaaaacaaacaacaggag |
13374 |
T |
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Target: scaffold0283; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 13322 - 13352
Alignment:
| Q |
22 |
tgaaatgaaatgtgtggatacgatacgatac |
52 |
Q |
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| T |
13322 |
tgaaatgaaatgtgtggatacgatacgatac |
13352 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 44967204 - 44967240
Alignment:
| Q |
53 |
gatatgatacgatacaaaccaaaacaaacaacaggag |
89 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
44967204 |
gatacgatacgatacaaaccaaaacaaacaacaggag |
44967240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 44967188 - 44967218
Alignment:
| Q |
22 |
tgaaatgaaatgtgtggatacgatacgatac |
52 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44967188 |
tgaaatgaaatgtgtggatacgatacgatac |
44967218 |
T |
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