View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13641_low_2 (Length: 544)
Name: NF13641_low_2
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 35951663 - 35951145
Alignment:
| Q |
18 |
actattctctctatgtaagggatatgactattttacattatatcatcaatctattagtaccccattccataagtacttttctcaattattgtcgttgtgt |
117 |
Q |
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| T |
35951663 |
actattctctctatgtaagggatataactattttacattatatcatcaatctattagtaccccattccataagtacttttctcaattattgtcgttgtgt |
35951564 |
T |
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| Q |
118 |
ataaatttcagctatgtctgtataattactgttcatgttatgccatgatgatgagtagtattgatgaacttgggttttgtggtgataaaaattgatttta |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35951563 |
ataaatttcagctatgtctgtataattattgttcatgttatgccatgatgatgagtagtattaatgaacttgggttttgtggtgataaaaattgatttta |
35951464 |
T |
|
| Q |
218 |
aacaattcattttactttaaaacttagttgaataaattaatttatgtttggataggtttattgagcttgacaaaaaatccagtgtaaaaatcacatttta |
317 |
Q |
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| T |
35951463 |
aataattcgttttactttaaaacttagttgaataaattaatttatgtttggatacgtttattgagcttgacaaaaaatccagtgtaaaagtcacatttta |
35951364 |
T |
|
| Q |
318 |
gactcaaaatctac-aaactagcttcaaattagatttaagaatcaattctgaagataaaatcatttgtattcaagaacaattaaacatgtcaacatcaaa |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35951363 |
gactcaaaatctacaaaactagcttcaaattagatttaggaatcaattctgaagataaaatcatttgtattcaagaacaattaaacatgtcaacatcaat |
35951264 |
T |
|
| Q |
417 |
tttacaactccagaatcaattttgcttgctataaacgtgaaacaaaagagtaggcttaattaattatattaagaccataagtatagcgattcttattcaa |
516 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35951263 |
tttacagctccagaatcaattttgcttgctataaacgtgaaacaaaaaagtaggcttaattaattatattaagaccataagtatagtgattcttattcaa |
35951164 |
T |
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| Q |
517 |
ataaatttattagtatatt |
535 |
Q |
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| T |
35951163 |
ataaatttattagtatatt |
35951145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 2778510 - 2778550
Alignment:
| Q |
399 |
aaacatgtcaacatcaaatttacaactccagaatcaatttt |
439 |
Q |
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| T |
2778510 |
aaacatgtcaacatcaattttacatcttcagaatcaatttt |
2778550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 50550592 - 50550516
Alignment:
| Q |
361 |
aattctgaagataaaatcatttgtattcaagaacaattaaacatgtcaacatcaaatttacaactccagaatcaatt |
437 |
Q |
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||||||||||| | ||||| || || |||| |||||||||||||||||| ||||| | |||| |||| |||||||| |
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| T |
50550592 |
aattctgaagacagaatcaattctaatcaacaacaattaaacatgtcaaaatcaactctacacatccaaaatcaatt |
50550516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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