View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13641_low_7 (Length: 301)
Name: NF13641_low_7
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_low_7 |
 | |
|
| [»] scaffold0511 (1 HSPs) |
| |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] chr3 (2 HSPs) |
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|
| [»] scaffold0144 (1 HSPs) |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 18872522 - 18872801
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18872522 |
aagccgtgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
18872621 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
18872622 |
gacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattg |
18872721 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaact |
300 |
Q |
| |
|
|||||||||||| ||||||||||| || || || ||||| |||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
18872722 |
ctgaagaaaggatcaagtttggattaca---agcggtagtcatggaggatcgccaacgaggagatgataaatggcgccaaact |
18872801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 16838504 - 16838231
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| || ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| | |
|
|
| T |
16838504 |
aagcaatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaa |
16838405 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
| ||||||||| || ||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16838404 |
ggcaacaagtgcatcacccgtttccatccaatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattg |
16838305 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatgg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838304 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatgg |
16838231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 18793959 - 18794239
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18793959 |
aagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
18794058 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
18794059 |
gacaacaagtggatcacccgtttacatcctaagaagattttggctcgtaggaatattggaaagaggatgaaggaggttgctaaaaagattgatgttattg |
18794158 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||||||||| ||||||||||| || || || ||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
18794159 |
ctgaagaaaggatcaagtttggattgca---agcggtagtcatggaggatcgccaacgaggagatgatgaatggcgccaaacta |
18794239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 16797992 - 16797719
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||| |||||||| || | ||||||||||| || ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| | |
|
|
| T |
16797992 |
aagcgatgttgtgcaaaaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaa |
16797893 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
| ||||||||| || ||| |||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16797892 |
ggcaacaagtgcatcacccgttttcatccaatgaaaattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattg |
16797793 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatgg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797792 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatgg |
16797719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 64 - 301
Target Start/End: Original strand, 16867389 - 16867626
Alignment:
| Q |
64 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaagattttggctc |
163 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| |||||||| ||||||| ||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
16867389 |
tatgtacttgatgatatattggatgaatgttcaataacttcaaaagcgcatggaggcaacaagtgcatcactagtttccatcctatgaagattttggctc |
16867488 |
T |
|
| Q |
164 |
ggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacgga |
263 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
16867489 |
gtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggatcaagtttggatttcaactagtgggagtcacaga |
16867588 |
T |
|
| Q |
264 |
ggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867589 |
ggagcaccaacgaggagatgatgaatggcgccaaacta |
16867626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 18870046 - 18870325
Alignment:
| Q |
19 |
agccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggag |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18870046 |
agccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgatgatatattggatgattgtacaataaaatcaaaagcacatggag |
18870145 |
T |
|
| Q |
119 |
acaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgc |
218 |
Q |
| |
|
||||||||||||| ||| |||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
18870146 |
acaacaagtggatcaccagtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgc |
18870245 |
T |
|
| Q |
219 |
tgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
||||||||||| || || ||||| || ||||| ||||| |||||| | ||||||||||| ||||||| |||||||||| |
|
|
| T |
18870246 |
tgaagaaaggatcaaattaggattaca---agtggtagtcatggaggatcgccaacgaggagttgatgaaaatcgccaaacta |
18870325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 64 - 301
Target Start/End: Complemental strand, 16658786 - 16658549
Alignment:
| Q |
64 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaagattttggctc |
163 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||| || || |||| |||||||||||||||||||||| |
|
|
| T |
16658786 |
tatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatggaggcaacaagtgcatcactagttttcatcctatgaagattttggctc |
16658687 |
T |
|
| Q |
164 |
ggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacgga |
263 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| || |
|
|
| T |
16658686 |
gtcgtaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggatcaagtttggatttcaactggtgggagtcacaga |
16658587 |
T |
|
| Q |
264 |
ggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16658586 |
ggagcagcaacgaggagatgatgaatggcgccaaacta |
16658549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 18587040 - 18587251
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18587040 |
aagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatcaaaagcacatgga |
18587139 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
18587140 |
gacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattg |
18587239 |
T |
|
| Q |
218 |
ctgaagaaagga |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18587240 |
ctgaagaaagga |
18587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 17070329 - 17070059
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| || ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| | |
|
|
| T |
17070329 |
aagcgatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataacttcaaaagcacatgaa |
17070230 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
| ||||||||| || ||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17070229 |
ggcaacaagtgcatcacccgtttccatccaatgaagattttggctcatcgcaacattggaaagaggatgaaggaggttgctaaaaggattgacgatattg |
17070130 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaa |
288 |
Q |
| |
|
|| ||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17070129 |
ctaaagaaaggatcgagtatggatttcaaccggtgggagtcacggaggagcaccaacgaggagatgatgaa |
17070059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 79 - 301
Target Start/End: Original strand, 18805589 - 18805808
Alignment:
| Q |
79 |
atattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| || || ||||||| |
|
|
| T |
18805589 |
atattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaa |
18805688 |
T |
|
| Q |
179 |
agaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgagg |
278 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| || || || ||||| |||||| | ||||||||| |
|
|
| T |
18805689 |
agaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggattgca---agcggtagtcatggaggatcgccaacgagg |
18805785 |
T |
|
| Q |
279 |
agatgatgaatggcgccaaacta |
301 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
18805786 |
agatgataaatggcgccaaacta |
18805808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 16988271 - 16987997
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| ||| |||||| ||| ||||| |||||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
16988271 |
aagcaatgttgtgaaacaatggctgcagaaactgtctgatgctgcttatgtacttgatgatatattggatgaatgctcaataacctcaaaagcacatgga |
16988172 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||||| |||||| ||||||| |
|
|
| T |
16988171 |
gacaaca---------ctagtttccatcctatgaagattttggctcatcgcaacattgggaagaggatgaagaaagttgctaaaaagattgatgatattg |
16988081 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16988080 |
ctgaagaaaggatcaagtttggatttcaacaagtgggagtcatggaggagcatcaacgaggagatgatgaatggcgccaaacta |
16987997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 301
Target Start/End: Complemental strand, 16788741 - 16788508
Alignment:
| Q |
65 |
atgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaagattttggctcg |
164 |
Q |
| |
|
|||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||| || ||| |||||| ||||| |||||||||||||| |
|
|
| T |
16788741 |
atgttcttgatgatttattggacgaatgttcaataacatcaaaagcacatggagacaacaagtgcatcacccgtttccttcctaagaagattttggctca |
16788642 |
T |
|
| Q |
165 |
gcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggag |
264 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||||| | ||||||| |||| |||| |||| |||||| || ||||||||| || || |
|
|
| T |
16788641 |
gcgtgacgttggaaagaggatgaaggcggttgctaaaaagattgacgttattgctaaagacaggatgaagtatggattgca---agtgggagtaacagaa |
16788545 |
T |
|
| Q |
265 |
gagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||| |||||||| | |||||| ||||||||||||| |
|
|
| T |
16788544 |
gagcgtcaacgaggtgctgatgagtggcgccaaacta |
16788508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 16781889 - 16781701
Alignment:
| Q |
54 |
tgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaag |
153 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||| || ||| ||||||| | |||||||||||| ||||||||| |||| || ||||||||||||||||| |
|
|
| T |
16781889 |
tgatgctgcttatgtgcttgatgatatattggacgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaag |
16781790 |
T |
|
| Q |
154 |
attttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatt |
242 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| ||||| |
|
|
| T |
16781789 |
attttggctcgtcgcaacattggaaagaggatgaaggagattgctaaagagatcgatgatattgctgaagaaaggatgaagttcggatt |
16781701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 16844511 - 16844423
Alignment:
| Q |
160 |
gctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatc |
248 |
Q |
| |
|
||||| |||| ||||||||||| |||||| ||||| ||| ||| |||||| | ||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
16844511 |
gctcgtcgtggcattggaaagaagatgaaagaggtagctgaaaagattgatgctattgctgaagaaagaatcaagtttggattacaatc |
16844423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 10182 - 9902
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10182 |
aagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
10083 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
10082 |
gacaacaagtggatcacccgttttcatcctaagaagattttggctcgttggcatattggaaagaggatgaaggaggttgctaaaaagattgatgttattg |
9983 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||||||||| ||||||||||| || || || ||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
9982 |
ctgaagaaaggatcaagtttggattgca---agcggtagtcatggaggatcgccaacgaggagatgatgaatggcgccaaacta |
9902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 5502 - 5223
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5502 |
aagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatcaaaagcacatgga |
5403 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
5402 |
gacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattg |
5303 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaact |
300 |
Q |
| |
|
|||||||||||| ||||||||||| || || || ||||| ||| || | |||||||||||||||| |||||||||||||| |
|
|
| T |
5302 |
ctgaagaaaggatcaagtttggattaca---agcggtagtcatggaagatcgccaacgaggagatgataaatggcgccaaact |
5223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 7052598 - 7052878
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| || ||| |||||||||||||| | |||| |
|
|
| T |
7052598 |
aagccatgctgtaaaagattggctgcagaagctggctgatgctgctcatgttcttgatgatatattggacgaatgttcaataacatcaaaaccctgtgga |
7052697 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||| |
|
|
| T |
7052698 |
gacaacaagtggatcacccgtttccatcctaagaagattttggctcggcgtgacattggaaagaggatgaaagaggttgctaaaaagattgatgttattg |
7052797 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||| ||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7052798 |
ctgaagaaaggatcaagtttggattaca---agtgggagtcatagaggagcgtcagcgaggagatgatgaatggcgccaaacta |
7052878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 38938694 - 38938918
Alignment:
| Q |
18 |
aagccatgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatgga |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| ||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
38938694 |
aagccatgttgtgaaagactggctgcagaaattgcgtgatgttgcttatgtacttgatgatatattggatgaatgttcaataaccttaaaagcacatggc |
38938793 |
T |
|
| Q |
118 |
gacaacaagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattg |
217 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
38938794 |
gacaacaagtggatcactcgtttccatcctctgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaagatcgatgatattg |
38938893 |
T |
|
| Q |
218 |
ctgaagaaaggaaaaagtttggatt |
242 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
38938894 |
ctgaagaaaggatgaagttcggatt |
38938918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 64 - 301
Target Start/End: Complemental strand, 38264 - 38027
Alignment:
| Q |
64 |
tatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaagattttggctc |
163 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| | |||| |||| |||||| ||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
38264 |
tatgtacttgatgatatattggatgaatgttcaataaccttaaaaccacacggagacgacaagtgcatcactagtttccatcctgtgaagattttggctt |
38165 |
T |
|
| Q |
164 |
ggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacgga |
263 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
38164 |
gtcgcaacattggaaagaggatgaaggaggttgctaaaaggattgatgatattgctgaagaaaggaacaaatttggatttcaacgagtgggagtcacgga |
38065 |
T |
|
| Q |
264 |
ggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38064 |
ggagcatcaacgaggagatgatgaatggcgccaaacta |
38027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 301
Target Start/End: Complemental strand, 13662 - 13392
Alignment:
| Q |
31 |
aaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtgga |
130 |
Q |
| |
|
||||| ||||| ||| | |||| ||||| ||| ||||| ||||||||||||||||||| ||| ||||||| | || ||||||||| ||||||||| ||| |
|
|
| T |
13662 |
aaagagtggctacagcaactgattgatgctgcttatgtgattgatgatatattggatgaatgttcaataaccttaagagcacatggcgacaacaagcgga |
13563 |
T |
|
| Q |
131 |
taacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaa |
230 |
Q |
| |
|
| || |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
13562 |
tcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaagatcgatgatattgctgaagaaaggat |
13463 |
T |
|
| Q |
231 |
aaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggcgccaaacta |
301 |
Q |
| |
|
||||| ||||| ||| | | | |||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
13462 |
gaagttcggattacaacaatttgcagtcacggaggagcgccaacgacgagatgatgaatggcgccaaacta |
13392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 9291 - 9103
Alignment:
| Q |
54 |
tgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaag |
153 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| |||||||| |||| || ||||||||||||||||| |
|
|
| T |
9291 |
tgatgctgcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggtaacaacaagcggatcactcgtttccatcctatgaag |
9192 |
T |
|
| Q |
154 |
attttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatt |
242 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||| ||||| |
|
|
| T |
9191 |
attttggttcgtcgcaacattggaaagaggatgaaggagattgctaaagagatcgacgatattgctgaagaaaggatgaagttcggatt |
9103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 9934 - 9746
Alignment:
| Q |
54 |
tgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaagtggataacctgtttccatcctatgaag |
153 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||| |||| || ||||||||||||||||| |
|
|
| T |
9934 |
tgatgctgcttatgtgcttgatgatatattggatgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaag |
9835 |
T |
|
| Q |
154 |
attttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgctgaagaaaggaaaaagtttggatt |
242 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
9834 |
attttggctcgtcgcaacattggaaagaggatgaaggagattgctaaagagattgatgatattgctgaagaaaggatgaagttcggatt |
9746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 13378916 - 13378693
Alignment:
| Q |
22 |
catgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagaca |
121 |
Q |
| |
|
|||| ||| |||||||||||||||||| | |||||||| || || |||||||||||||||| || || | | | |||| ||| ||||||||||||||| |
|
|
| T |
13378916 |
catgctgtaaaagattggctgcagaagttaactgatgtagcgcatattcttgatgatatattagacgaatattcgataagatccaaagcacatggagacg |
13378817 |
T |
|
| Q |
122 |
ac---aagtggataacctgtttccatcctatgaagattttggctcggcgtgacattggaaagaggatgaaggaggttgctaaaaggattgaggatattgc |
218 |
Q |
| |
|
|| |||||||| || |||||||||||| ||||||||||||||| || | ||||||||||||||||| ||||||||||||| |||||| | |||||| |
|
|
| T |
13378816 |
acgacaagtggatcactcgtttccatcctaagaagattttggctcgccgaggtattggaaagaggatgaaagaggttgctaaaaagattgatgttattgc |
13378717 |
T |
|
| Q |
219 |
tgaagaaaggaaaaagtttggatt |
242 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
13378716 |
tgaagaccggatcaagtttggatt |
13378693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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