View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13641_low_8 (Length: 253)
Name: NF13641_low_8
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_low_8 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 1281455 - 1281678
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281455 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
1281554 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1281555 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctctggagtcataactgtaatgcttccg |
1281654 |
T |
|
| Q |
218 |
aaattcacataaacaacggatctc |
241 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
1281655 |
aaattcacataaacaacagatctc |
1281678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 4617363 - 4617593
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
4617363 |
ggttcaacactttgtcttgtggacaccaacttgctattaggcctctatctgcaatttcatttgtaaactcagatgagaaaatcactgagccaccaatgac |
4617462 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| ||| |||| |||||||||||||||| | | |||||| || ||||||||||||||||| ||| |
|
|
| T |
4617463 |
aagatcaggccttatgatccacaaaaatgatttcttgcaattggccaaaccccaagcaaattccagtaattgctcgggtgtcataactgtaatgctgccg |
4617562 |
T |
|
| Q |
218 |
aaattcacataaacaacggatctctgctcct |
248 |
Q |
| |
|
||||||||||||||||| |||| | |||||| |
|
|
| T |
4617563 |
aaattcacataaacaactgatcccggctcct |
4617593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 4602130 - 4602360
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4602130 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcatttgtaaactcagatgacaaaatcactgagccaccaatgac |
4602229 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | || ||| |||| ||||||||| ||||| | ||| | || ||||||||||||||||| || |
|
|
| T |
4602230 |
aagatcaggcctaatgatccacaaaaatggtttatggcaattggccaaaccccaagcgaattctaataattgatggggtgtcataactgtaatgctgcca |
4602329 |
T |
|
| Q |
218 |
aaattcacataaacaacggatctctgctcct |
248 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |
|
|
| T |
4602330 |
aaattcacataaacaacggatcccggctcct |
4602360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 4564052 - 4564282
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
4564052 |
ggttcaatactttctcctgtggacaccaacttgcaattaagcctctatctgaaatttcattcacaaactcagatgacaaaacgactgagccaccaatgac |
4564151 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||| ||||||||| ||||||||||||| ||||| |||| ||| |||| ||||||||||||||| ||||| | || |||||||||||||||||||| |
|
|
| T |
4564152 |
aaggtcaggcctaatgatccacaaaaagggtttattgcaattggccaacccccaagcaaattccaacagttgttttggtgtcataactgtaatgcttcca |
4564251 |
T |
|
| Q |
218 |
aaattcacataaacaacggatctctgctcct |
248 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |
|
|
| T |
4564252 |
aaattcacataaacaacggatcccggctcct |
4564282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 4506203 - 4506414
Alignment:
| Q |
23 |
aacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagat |
122 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||| || || ||||||| ||||||||| ||||| ||||||| |
|
|
| T |
4506203 |
aacactttctcttgtgaacaccagcttgctataaggcttctatctgaaatttcatttgcaaactctgaagacaaaaccactgagccaccaattacaagat |
4506302 |
T |
|
| Q |
123 |
caggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaatt |
222 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |||| |||||||||||| || || || |||||||| ||||| ||| |||||||| ||||| |
|
|
| T |
4506303 |
caggcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaactctaaaaatttctccggagacataattgtgatgcttccaaaatt |
4506402 |
T |
|
| Q |
223 |
cacataaacaac |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4506403 |
cacataaacaac |
4506414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 4461472 - 4461685
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4461472 |
acttgctcttgcggacaccagcttgctattaggcctctatctgaaatttcattcacaaactcagatgacaaaataaacgagccgccaatgacaagatcag |
4461571 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||| ||||| |||||||||||| || ||||| || |||||||||||||| ||||| || ||||| || |
|
|
| T |
4461572 |
gcctaatgatccataaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcaggagtcataactgtgatgctgccaaaatttac |
4461671 |
T |
|
| Q |
226 |
ataaacaacggatc |
239 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
4461672 |
atagacaacagatc |
4461685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 4514912 - 4514691
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||||| |||||||| |
|
|
| T |
4514912 |
ggttcaaaactttctcttgtggacaccaacttgctattaggcctctatctgcaatttcattcacaaactcagacgacaaaaccactgagccaccaatgac |
4514813 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||||||||||| ||||||| ||||| | |||||||||||| |||| |||||||||||| || | || |||||||| ||||| || ||||| || |
|
|
| T |
4514812 |
aagatcaggcctaatgatccataaaaaggttttcttgctattggccaaaccccaagcaaactctaacaatttctccggagacataatcgtgatgctacca |
4514713 |
T |
|
| Q |
218 |
aaattcacataaacaacggatc |
239 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
4514712 |
aaattaacataaacaacagatc |
4514691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 3172082 - 3172241
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| || ||||| |||||||| |
|
|
| T |
3172082 |
ggttcaacactttctcttgcggacaccaacttgctattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgac |
3172181 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||| || || | |||||||||||| |
|
|
| T |
3172182 |
aagatcaggcctaataatccacaaaaagggtttcttgctgttggctaaaccccaagcaaa |
3172241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 4613501 - 4613290
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| |||||||| || || ||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4613501 |
acttgctcttgaggacaccagctcgcgattaggcctctatctgaaatttcattcacaaactctgatgacaaaacaactgagccgccaatgacaagatcag |
4613402 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| |||| |||||||||||| || |||| || | ||||||||| || ||||| || |||||||| |
|
|
| T |
4613401 |
gcctaatgatccacaaaaagggttgcttgctattcgccaaaccccaagcaaactctaatagtttttctgcagtcataacggtcatgctcccaaaattcac |
4613302 |
T |
|
| Q |
226 |
ataaacaacgga |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4613301 |
ataaacaacgga |
4613290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 4622491 - 4622698
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||| |||||||||||||| |||| |||||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
4622491 |
acttcctcttgtggacaccaacctgcgattaggcctctacctgaaatttcattctcaaactcagatgacaaaataaacgagccgcccatgacaaggtcag |
4622590 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||| || ||||||| ||||||||||| || |||||||| |
|
|
| T |
4622591 |
gcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaatagttgatctcgagtcatcactgtaatgctgccaaaattcac |
4622690 |
T |
|
| Q |
226 |
ataaacaa |
233 |
Q |
| |
|
||||||| |
|
|
| T |
4622691 |
gtaaacaa |
4622698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 4626300 - 4626508
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||| || |||||| |||| | |||||| ||||| |||||||||| |
|
|
| T |
4626300 |
actttctcttgcggacaccagcttgcgattaggcctctatctgaaatttcattctcaaactcggatgacgaaataaatgagccaccaatcacaagatcag |
4626399 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| || |||| || |||||||||||| ||| ||| || || ||||| |
|
|
| T |
4626400 |
gcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagtttctgtggagtcataactataacgctgccaaagttcac |
4626499 |
T |
|
| Q |
226 |
ataaacaac |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
4626500 |
ataaacaac |
4626508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 4560847 - 4561005
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||| ||| ||||| |||||||| |
|
|
| T |
4560847 |
ggttcaatactttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaa-tcagatgagaaaaccaccgagccaccaatgac |
4560945 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
4560946 |
aagatcaggcctaatgatccataaaaatggtttcttgctgttggccaaaccccaagcaaa |
4561005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 4574649 - 4574808
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| |||| ||| ||||| |||||||| |
|
|
| T |
4574649 |
ggttcaatactttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgac |
4574748 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||| || |||| |||||||||||| |
|
|
| T |
4574749 |
aagatcaggcctaatgatccacaaaaagggttttttgctgttggccaaaccccaagcaaa |
4574808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 4516662 - 4516875
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| ||||||||| ||| |||||||| |||| || ||||||||||| || ||||| |||||||| |
|
|
| T |
4516662 |
ggttcaacactttctcttgcggacaccagcttgctattacgcctctatccgaagtttcattcacaaaatcggatgacaaaataaccgagccaccaatgac |
4516761 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||| ||||||||| | ||||||||||| ||||||||||| || |||| ||||||||| || || ||||| || |||||||| || || |||||||| |
|
|
| T |
4516762 |
aaggtcaggcctaataatccacaaaaaaggtttcttgctgttggccaaaccccaagcgaactctaacagttgatctggagtcatgaccgtgatgcttcca |
4516861 |
T |
|
| Q |
218 |
aaattcacataaac |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4516862 |
aaattcacataaac |
4516875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 4299598 - 4299382
Alignment:
| Q |
32 |
tcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctag |
131 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||| ||||||||||||| |||| |||||||||||||| | |||||||||||||||| || |||||| |
|
|
| T |
4299598 |
tcttgtggacactagcttgcggttaggcctctatttgaaatttcattctcaaactcagatgacaaaataaacaagccgccaatgacaaggtctggcctaa |
4299499 |
T |
|
| Q |
132 |
tgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaac |
231 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| ||||||||||| || |||||||| |||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
4299498 |
tgatccacaaaaatggtttcctgcaattggccaaaccccaagcaatctctaacagttgctctggagtcataactgtaacgctgccaaaattcacataaac |
4299399 |
T |
|
| Q |
232 |
aacggatctctgctcct |
248 |
Q |
| |
|
||| |||| | |||||| |
|
|
| T |
4299398 |
aaccgatcccggctcct |
4299382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 4266957 - 4266798
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
4266957 |
ggttcaacactttatcttgtggacaccaacttgctattagtcctctatctgaaatttctttaaaaaaatcagatgacaaaacaactgagcccccaatgac |
4266858 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| | ||||||||||| || |||||||| || |||| |||||||||||| |
|
|
| T |
4266857 |
aagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaa |
4266798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 4457935 - 4458148
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||| |||| || |||||||||| || ||||| |||||||| |
|
|
| T |
4457935 |
ggttcaacactttatcttgtggacaccaacttgctattaagcctctatcagaagtttcattcacaaaatccgatgacaaaacaaccgagccaccaatgac |
4458034 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatgg-tttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttcc |
216 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||| || |||| | ||||||||||||| || | ||| ||| ||||||||| |||||||| |
|
|
| T |
4458035 |
aagatcaggcctagttatccacaaaaaaggttttcttgctgttggccaaaacccaagcaaattctaagagcttctcttgagacataactgtgatgcttcc |
4458134 |
T |
|
| Q |
217 |
gaaattcacataaa |
230 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4458135 |
aaaatttacataaa |
4458148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 4504188 - 4504029
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || ||||||| ||| |||||||| |||| ||||||||||| | | ||||||| ||||| || |
|
|
| T |
4504188 |
ggttcaacactttatcttgtggacaccaacttgctacaagtcctctattagaagtttcattcacaaaatcagatgacaacacctctgagccaccaataac |
4504089 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
4504088 |
aagatcaggcctaataatccacaaaaaaggtttcttgctattggccaaaccccaagcaaa |
4504029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 4490144 - 4489987
Alignment:
| Q |
20 |
ttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaa |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| | | |||||| ||||| |||| |
|
|
| T |
4490144 |
ttcaataccttctcttgtggacaccaacttgctattagtcctctatctgaaatttctttcaaaaaatcagatgacaacacctgtgagccaccaataacaa |
4490045 |
T |
|
| Q |
120 |
gatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| || |||| |||||| ||||| |
|
|
| T |
4490044 |
gatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaa |
4489987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 4259937 - 4259729
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| |||||||| || || |||||||||||||| ||||||||| || |||| |||||||||||||| | ||||| ||||| | || |||| |
|
|
| T |
4259937 |
acttgctcttgcggacaccagctcgcgattaggcctctatccgaaatttcactctcaaactcagatgacaaaataaaggagccaccaataatgaggtcag |
4259838 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| ||||||||||| || || ||| || |||||||||||||||||||| || |||||||| |
|
|
| T |
4259837 |
gcctaatgatccacaaaaagggtttcttgctattggccaatccccaagcaaactctaaaaattgatctggagtcataactgtaatgctgccaaaattcac |
4259738 |
T |
|
| Q |
226 |
ataaacaac |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
4259737 |
gtaaacaac |
4259729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4571313 - 4571532
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| ||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||| || |||||||||| |||||||| |||||||| |
|
|
| T |
4571313 |
ggttcaatactttctcttgcgagcaccaaccagcaattaggcctctatctgaaatttcattcacaaactccgatgacaaaacaactgagccaccaatgac |
4571412 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||| ||||||||| || | |||||| ||||| || |||| || | |||||||||||| |||| || |
|
|
| T |
4571413 |
aagatcgggcctaatgatccacaaaaagagttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgaagtcataactgtcctgctccca |
4571512 |
T |
|
| Q |
218 |
aaattcacataaacaacgga |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4571513 |
aaattcacataaacaacgga |
4571532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 4592580 - 4592791
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| |||||||| || || |||| |||||||||||||||||||||| |||| || |||||||||| | || ||| |||||||||||||||| |
|
|
| T |
4592580 |
acttgctcttgaggacaccagctcgcgattacgcctctatctgaaatttcattcacaaactccgatgacaaaacaattgtgccaccaatgacaagatcag |
4592679 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| ||| |||| |||||||||||| || | || ||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
4592680 |
gcctaatgatccacaaaaaaggtttattgcaattggccaaaccccaagcaaactctaacattttctcttcattcataactgtaaggctgccgaaattcac |
4592779 |
T |
|
| Q |
226 |
ataaacaacgga |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4592780 |
ataaacaacgga |
4592791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 4598520 - 4598671
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| ||||||| ||||| | || |||||||||||||||||||||| |||| || |||||||||| || ||||| |||||||||||||||| |
|
|
| T |
4598520 |
acttgctcttgcagacaccagcttgcaactaagcctctatctgaaatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcag |
4598619 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
4598620 |
gcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaa |
4598671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 4481034 - 4481255
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | | ||||||||||| | ||||||||| |||||||| |
|
|
| T |
4481034 |
ggttcaaaactttctcttgtggacaccaacttgctattaggcctctatttgaaatttctttcaaatactcagatgacaacaccactgagccaccaatgac |
4481133 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||| || |||| | ||||||||||| ||| |||||||| || | |||||||||||| || |||| ||| ||| ||||| ||| ||||| || |
|
|
| T |
4481134 |
aagattagacctaataatccacaaaaagttttttttgctattggcaaaaccccaagcaaactctaagagtttctcttgagacataattgtgatgctgcca |
4481233 |
T |
|
| Q |
218 |
aaattcacataaacaacggatc |
239 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
4481234 |
aaatttacataaacaacagatc |
4481255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 4579781 - 4579989
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| |||||||| || | |||||||||||||||||||||||||||| |||| || |||||||||| |||||||||| ||||||||||| | |
|
|
| T |
4579781 |
acttgctcttgcggacaccagctcgttattaggcctctatctgaaatttcattcacaaactccgatgacaaaacagctgagccgccgatgacaagatcgg |
4579880 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| || | |||||| ||||| || |||| || | |||||||||||| | ||| || |||||||| |
|
|
| T |
4579881 |
gcctaatgatccacaaaaagggttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgcagtcataactgtcaagctcccaaaattcac |
4579980 |
T |
|
| Q |
226 |
ataaacaac |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
4579981 |
ataaacaac |
4579989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4585977 - 4586196
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| |||| |||||| || ||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||| || || || |||||||| |
|
|
| T |
4585977 |
ggttcaatacttgctcttgcgggcaccaacccgcgattaggcctctatctgaaatttcattcttaaactcagatgacaaaaccaaggaaccaccaatgac |
4586076 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||||||| ||| ||||||| ||||| ||| ||||||||| |||| |||||||||||| || |||| || | |||||||||||| |||| || |
|
|
| T |
4586077 |
aagatcaggtctaatgatccataaaaaatgttgcttgctattggccaaaccccaagcaaactctaatagtttttctgtagtcataactgttgtgctccca |
4586176 |
T |
|
| Q |
218 |
aaattcacataaacaacgga |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4586177 |
aaattcacataaacaacgga |
4586196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 4568397 - 4568535
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||| |||||||||| ||| || ||||| |||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
4568397 |
ggttcaacacttgctcttgcggacaccagcttgctatttggcctctatccgaagttccattcacaaactcggatgacaaaataactgagccaccaatgac |
4568496 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgct |
156 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4568497 |
aagctaaggcctaatgatccacaaaaaaggtttcttgct |
4568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 4557501 - 4557685
Alignment:
| Q |
53 |
attaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttct |
152 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| |||||||| || ||||||||||| |||||| ||||||||||||| |||| || |
|
|
| T |
4557501 |
attaggcctctatctgaaatttcattgacaaactccgatgacaaaacaactgagccaccgatgacaagatcgggcctaatgatccacaaaaagggttgct |
4557600 |
T |
|
| Q |
153 |
tgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaacaacgga |
237 |
Q |
| |
|
||||||| || | |||||| ||||| || |||| || | ||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
4557601 |
tgctatttgctaaaccccatgcaaactctaacagtttttctgccgtcataactgtcatgctcccaaaattcacataaacaacgga |
4557685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 4470179 - 4470365
Alignment:
| Q |
53 |
attaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttct |
152 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||| |||| || |||||||||||||||||||| |||||| ||||||||||||| |||| || |
|
|
| T |
4470179 |
attaggcctctatctgaaattccatttacaatctctgatgagaaaactaccgagccgccaatgacaagatcgggcctaatgatccacaaaaagggttgct |
4470278 |
T |
|
| Q |
153 |
tgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcacataaacaacggatc |
239 |
Q |
| |
|
||||||| |||| |||||||||||| || |||| ||| |||| ||||||||| | ||| |||||||| ||||| ||||| |||| |
|
|
| T |
4470279 |
tgctatttgccaaaccccaagcaaactctaacagtttctctggagacataactgtgacgctgccgaaatttacatagacaacagatc |
4470365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 4256347 - 4256199
Alignment:
| Q |
86 |
tcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaa |
185 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || ||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| || | |
|
|
| T |
4256347 |
tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatacacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca |
4256248 |
T |
|
| Q |
186 |
gttgctccggagtcataactgtaatgcttccgaaattcacataaacaac |
234 |
Q |
| |
|
|||| || |||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
4256247 |
gttgatctggagtcataactgtaatgctgccaaaattcacgtaaacaac |
4256199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4493296 - 4493346
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctg |
68 |
Q |
| |
|
|||||| || ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4493296 |
ggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg |
4493346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 1674567 - 1674788
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
1674567 |
ggttcaacactttctcttgtggacaccaatttgatattaggcctctatctgaaatttctttcataaactcagatgacaaaaccactgagccaccaatgac |
1674666 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccg |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| || |||| |||||||||||| ||| ||||| || ||||||||||| ||||||| ||| |
|
|
| T |
1674667 |
aagatcaggcctagtgatccacaaaaaaggtttcttgcaatcggccaaaccccaagcaaactccaatagttgatctggagtcataacaataatgctaccg |
1674766 |
T |
|
| Q |
218 |
aaattcacataaacaacggatc |
239 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
1674767 |
aaattcacataaacaaccgatc |
1674788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 20863634 - 20863475
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||| |||||||| |
|
|
| T |
20863634 |
ggttcaacaccttctcttgtggacaccaactcgcgattaggcctctatctgaaatttcattcacaaacgcagatgaaaaaatcaccgagccaccaatgac |
20863535 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| || |||| |||||| ||||| |
|
|
| T |
20863534 |
aagatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaa |
20863475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 16686050 - 16685839
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| |||||| || ||||| || || ||||||| ||||||||| ||||||||| ||| ||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
16686050 |
acttgctcttgcgggcaccagctcgcgattaggcttctatctgagatttcattcttaaactcagatgacaaaaccacggaaccgcaaatgacaagatcag |
16685951 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
|||| ||||||| ||| ||| ||||||||| | || |||||||||||| || |||| || | |||||||||||| ||||| || |||||||| |
|
|
| T |
16685950 |
acctaatgatccattgaaaatgttgcttgctattggtcaaaccccaagcaaactctaatagtttttctgcagtcataactgtcatgctcccaaaattcac |
16685851 |
T |
|
| Q |
226 |
ataaacaacgga |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16685850 |
ataaacaacgga |
16685839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 3502 - 3294
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
3502 |
acttgctcttgtggacaccagcttgtgattaggcctctatctgaaatttcattctcaaattctgatgacaaaataaacgagccgccaatgacaagatcag |
3403 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
3402 |
gcctaatgatccacaaaaacggtttcttgctatcggccaaaccccaagcaaattctaacagttgatttggagtcataactgtaatgctgccgaaattcac |
3303 |
T |
|
| Q |
226 |
ataaacaac |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
3302 |
ataaacaac |
3294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 3086763 - 3086977
Alignment:
| Q |
20 |
ttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaa |
119 |
Q |
| |
|
||||| |||| |||||| |||||||| ||||| ||||| ||||||||||||||||| ||| |||| |||||||||| ||| | |||||||||||||||| |
|
|
| T |
3086763 |
ttcaatacttgctcttgcggacaccagcttgcgattagacctctatctgaaatttctttctcaaactcagatgacataataaaggagccgccaatgacaa |
3086862 |
T |
|
| Q |
120 |
gatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaa |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| || |||||||| ||||||||||||||||||| || || |
|
|
| T |
3086863 |
gatcaggcctaatgatccacaaaaatggtttcttgctattggccaaaccccaagcaaactctaatagttgctcttgagtcataactgtaatgctgccaaa |
3086962 |
T |
|
| Q |
220 |
attcacataaacaac |
234 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
3086963 |
actcacataaacaac |
3086977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 4469 - 4261
Alignment:
| Q |
26 |
actttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgacaagatcag |
125 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
4469 |
acttgctcttgtggacaccagctcgcaattaggcctctatctgaaatttcattctcaaactcagatgacaaaataaacgagccgccaatgacaaggtcag |
4370 |
T |
|
| Q |
126 |
gcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaagttgctccggagtcataactgtaatgcttccgaaattcac |
225 |
Q |
| |
|
||||| ||||||||||||| | |||||| | ||| | || | |||||||||| || ||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4369 |
gcctaatgatccacaaaaaggatttcttacaattggtcaaaacccaagcaaactctaacagttgatctggagtcataactgtaatgcttccaaaattcac |
4270 |
T |
|
| Q |
226 |
ataaacaac |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
4269 |
ataaacaac |
4261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 27999890 - 27999753
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
27999890 |
ggttcaaaactttctcttgtggacaccaatttgatattaggcctctatctgaaatttctttcctaaactcagatgacaaaaccactgagccaccaatgac |
27999791 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgc |
155 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
27999790 |
aagattaggcctagtgatccacaaaaaaggtttcttgc |
27999753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 24103340 - 24103499
Alignment:
| Q |
18 |
ggttcaacactttctcttgtggacaccaacttgctattaggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcactgagccgccaatgac |
117 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
24103340 |
ggtttaacactttatcttgtggacaccaacttgctattagtcctctatctgaaacttctttaaaaaaatcagatgacaaaacaactgagcccccaatgac |
24103439 |
T |
|
| Q |
118 |
aagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaa |
177 |
Q |
| |
|
||||||||||||| | ||||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
24103440 |
aagatcaggcctaattatccacaaaaaagggttcttgctattggccaaaccccaagcaaa |
24103499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 3261 - 3162
Alignment:
| Q |
57 |
ggcctctatctgaaatttcattcgcaaagtcagatgacaaaatcac-tgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgc |
155 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||| || ||||| ||| ||| |||||||||||||| |||| |||| ||||||||| ||| |||||||||| |
|
|
| T |
3261 |
ggcctctatctgaagtttcattctcaaactcatataacaaag-cacatgatccgccaatgacaaggtcagacctaatgatccacacaaagggtttcttgc |
3163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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