View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13642_low_1 (Length: 562)
Name: NF13642_low_1
Description: NF13642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13642_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 47993145 - 47992912
Alignment:
| Q |
10 |
aagaatattggttaaaagctaattgcaccattgagnnnnnnnntccccagttatgatattgaatacctaggactctcgaggccgtggattaaagaaaatc |
109 |
Q |
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| T |
47993145 |
aagaatattggttaaaagctaattgcaccattgagaaaaaaa-tccccagttatgatattgaatacctaggactctcgaggccgtggattaaagaaaatc |
47993047 |
T |
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| Q |
110 |
accatcaataagaataattggttatgaagttgatatgtgtaattatcctcaatggatttaatttaactttgttttagataccaagaaaatctagctagtc |
209 |
Q |
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| T |
47993046 |
accatcaataagaataattggttatgaagttgatatttgtaattatcctcaatggatttaatttaactttgttttagataccaagaaaatctagctaatc |
47992947 |
T |
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| Q |
210 |
acatcacagcaaataaaatggtgtatgaaattcgt |
244 |
Q |
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| T |
47992946 |
acatcacagcaaataaaatggtgtatgaaattcgt |
47992912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 295 - 470
Target Start/End: Complemental strand, 47992861 - 47992686
Alignment:
| Q |
295 |
ctagtttgttactatcattctaaagagtcaaaagtagtaacacaaaaaatgatggaccaagttctctaatagtttcctctatggatgttgccgatagatt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47992861 |
ctagtttgttactatcattctaaagagtcaaaagtagtaagacaaaaaatgatggaccaagttctctaatagcttcctctatggatgttgccgatagatt |
47992762 |
T |
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| Q |
395 |
ggttcctttgttttggttcttaattttaaaattttgagttcaataggtgtccttgtacgttgacaaacaacatgga |
470 |
Q |
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| T |
47992761 |
ggttcctttgttttggttcttaattttaaaattttgagttcaataggtgtccttgtacgttgacacacaacatgga |
47992686 |
T |
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