View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13642_low_2 (Length: 474)
Name: NF13642_low_2
Description: NF13642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13642_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 3 - 455
Target Start/End: Complemental strand, 15695213 - 15694761
Alignment:
| Q |
3 |
catgtccaagaatatcctttgacttttctaaaatatctatcaatacaaacacatgaagagtggacttggtaaacataaattcatgactcaaattttctat |
102 |
Q |
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| T |
15695213 |
catgaccaataatatcctttgacttttctaaaatatctatcaatacaaacacatgaagagtggacttggtaaacataaattcatgactcaaattttctat |
15695114 |
T |
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| Q |
103 |
cattacagcatcatttgctttggacttctaaatataatagctcaattatcattacaacatcattggcaataattggaatcatgcaataggaacatagtac |
202 |
Q |
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| T |
15695113 |
cattacagcatcatttgctttggacttctaaatataatagctcaattatcattacaacatcattggcaataattggaatcatgcaataggaacatagtac |
15695014 |
T |
|
| Q |
203 |
tccatggaaggaagaaaactaaacttgacatcaatattttttgctttcatactatatataagcttcaaacaactcattacaaaagctcaatcacctactt |
302 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15695013 |
tccatggaaggaagaaaactaaacttgagatcaatattttttgctttcatactatatataagcttcaaacaactcattacaaaagctcaatcacctactt |
15694914 |
T |
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| Q |
303 |
atatgcgggatgactgtaattactcaaaaccaaaggttcttagcaatgcatacaaaacaaatctcaaaagcatcctctcatatctatctgctgatgcagc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15694913 |
atatgcgggatgactgtaattactcaaaaccaaaggttcttagcaatgcatacaaaacaaatctcaaaagcatcctctcatatctatctgctgatgcagc |
15694814 |
T |
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| Q |
403 |
caaaagcaaaggttataactacaccagcataggcgaaaacacaacaaaaggag |
455 |
Q |
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| T |
15694813 |
caaaagcaaaggttataactacaacagcataggcgaaaacacaacaaaaggag |
15694761 |
T |
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