View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13642_low_3 (Length: 332)
Name: NF13642_low_3
Description: NF13642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13642_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 43907573 - 43907877
Alignment:
| Q |
9 |
gaagaatatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagagatgggagcgtttcaagaaaactttcaat |
108 |
Q |
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| T |
43907573 |
gaagaaaatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagaggtgggagcgtttcaagaaaactttcaat |
43907672 |
T |
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| Q |
109 |
caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca |
208 |
Q |
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| T |
43907673 |
caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca |
43907772 |
T |
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| Q |
209 |
taacggtatttcacaccatatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag |
308 |
Q |
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| T |
43907773 |
taacggtatttcacaccgtatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag |
43907872 |
T |
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| Q |
309 |
cttat |
313 |
Q |
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| T |
43907873 |
cttat |
43907877 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 25487466 - 25487521
Alignment:
| Q |
247 |
actataggcctattttgattaactcatttgagtttatctattgacataaacacttg |
302 |
Q |
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| T |
25487466 |
actatagccatattttgattaacttatttgagtttatctattagcataagcacttg |
25487521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 17631039 - 17631067
Alignment:
| Q |
273 |
tttgagtttatctattgacataaacactt |
301 |
Q |
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| T |
17631039 |
tttgagtttatctattgacataaacactt |
17631067 |
T |
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