View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13643_high_4 (Length: 321)
Name: NF13643_high_4
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39291875 - 39291599
Alignment:
| Q |
1 |
tattctgtgaggcggatatgttatttag---gcaagtttttggaacataaat-----gaacttctttgtatggagtttgactctactatttatagaaaag |
92 |
Q |
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| T |
39291875 |
tattctgtgaggcagatatgttatttagtaggcaagtttttggaacataaattaaatgaacttttttgtatggagtttgactctactatttatagaaaaa |
39291776 |
T |
|
| Q |
93 |
actaagaaactactaactcatacaatgcacgggtgtcaatgtattcgaacttcctttggagtctcttctgcaagtt-------tgtactttgaattttga |
185 |
Q |
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| T |
39291775 |
actaagaaactactaactcatacaatgcacgggtgtcaatgtattctaacttcctttggagtctcttctgcaagttttcttcgtgtactttgaattttga |
39291676 |
T |
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| Q |
186 |
atgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggatatggaagttttaagaagttatgt |
262 |
Q |
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| T |
39291675 |
atgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggatatggaagttttaagaagttatgt |
39291599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 29456818 - 29456757
Alignment:
| Q |
30 |
caagtttttggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaa |
91 |
Q |
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| T |
29456818 |
caagtttttggaacgaaaataaactcctttgcatgaagtttgattctactatttatagaaaa |
29456757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 40945572 - 40945507
Alignment:
| Q |
28 |
ggcaagtttt-tggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaag |
92 |
Q |
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| T |
40945572 |
ggcaagttttgtggaacataaatgaactcctttgcatgaagtttgattctactattcataaaaaag |
40945507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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