View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13643_high_5 (Length: 308)
Name: NF13643_high_5
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 14039584 - 14039306
Alignment:
| Q |
19 |
acaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccga |
118 |
Q |
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| T |
14039584 |
acaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccga |
14039485 |
T |
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| Q |
119 |
gttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctcca |
218 |
Q |
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| T |
14039484 |
gttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctcca |
14039385 |
T |
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| Q |
219 |
aatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
297 |
Q |
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| T |
14039384 |
aatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
14039306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 18954555 - 18954277
Alignment:
| Q |
19 |
acaacctcccaatgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccga |
118 |
Q |
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| T |
18954555 |
acaacctcccgttgttgatcaaaccacgtggagcaaccgggggtggaaactgcatgacaacaggttgcatggtggatttgaacacggcgtgtccaaccga |
18954456 |
T |
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| Q |
119 |
gttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctcca |
218 |
Q |
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| T |
18954455 |
gttgaaagtgatgagtaacggaagcagtgtagcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactcca |
18954356 |
T |
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| Q |
219 |
aatacatgcaagccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
297 |
Q |
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||||||||||||||||||| |||||||| || || |||||||| ||||| || |||||||| || ||||||||||||| |
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| T |
18954355 |
gatacatgcaagccaagttcgtactcacaattctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatg |
18954277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 31945163 - 31945019
Alignment:
| Q |
153 |
tgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttt |
252 |
Q |
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|||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||| | |||| | || || ||||||||||||||||| ||||| | |
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| T |
31945163 |
tgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttct |
31945064 |
T |
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| Q |
253 |
tcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
297 |
Q |
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| T |
31945063 |
tcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatg |
31945019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 297
Target Start/End: Original strand, 8798177 - 8798324
Alignment:
| Q |
150 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| | ||| || |||| || || |||||||| ||||| |||| |
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| T |
8798177 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagt |
8798276 |
T |
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| Q |
250 |
ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
297 |
Q |
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|||| |||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
8798277 |
tttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
8798324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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