View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13643_low_12 (Length: 217)

Name: NF13643_low_12
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13643_low_12
NF13643_low_12
[»] chr7 (16 HSPs)
chr7 (38-204)||(28592274-28592440)
chr7 (122-205)||(21924894-21924977)
chr7 (77-143)||(22685435-22685501)
chr7 (82-205)||(3126933-3127056)
chr7 (1-38)||(1282556-1282593)
chr7 (1-38)||(18922947-18922984)
chr7 (1-37)||(3062264-3062300)
chr7 (1-37)||(9915529-9915565)
chr7 (1-37)||(9923441-9923477)
chr7 (1-37)||(42039673-42039709)
chr7 (1-37)||(45196804-45196840)
chr7 (1-40)||(15091038-15091077)
chr7 (1-36)||(25867276-25867311)
chr7 (142-200)||(2989361-2989419)
chr7 (112-178)||(22851266-22851332)
chr7 (1-37)||(24505494-24505530)
[»] chr4 (13 HSPs)
chr4 (39-205)||(29540570-29540737)
chr4 (1-43)||(42244531-42244573)
chr4 (1-46)||(44998781-44998826)
chr4 (1-38)||(16004532-16004569)
chr4 (163-200)||(20135629-20135666)
chr4 (1-42)||(27967881-27967922)
chr4 (1-38)||(36570019-36570056)
chr4 (1-37)||(2526542-2526578)
chr4 (1-37)||(10778991-10779027)
chr4 (1-37)||(38955042-38955078)
chr4 (1-36)||(21515360-21515395)
chr4 (1-42)||(33612894-33612935)
chr4 (1-34)||(46630648-46630681)
[»] chr3 (22 HSPs)
chr3 (38-200)||(15266907-15267070)
chr3 (82-139)||(1346654-1346711)
chr3 (1-46)||(35320351-35320396)
chr3 (113-205)||(49322060-49322151)
chr3 (1-38)||(49950923-49950960)
chr3 (118-198)||(15085905-15085985)
chr3 (1-37)||(33830901-33830937)
chr3 (1-37)||(36019416-36019452)
chr3 (1-37)||(50465843-50465879)
chr3 (1-37)||(51235892-51235928)
chr3 (1-37)||(52782159-52782195)
chr3 (2-37)||(32720358-32720393)
chr3 (1-36)||(35352191-35352226)
chr3 (1-38)||(44962975-44963012)
chr3 (1-34)||(48388762-48388795)
chr3 (1-38)||(48925410-48925447)
chr3 (1-38)||(53376961-53376998)
chr3 (1-37)||(347061-347097)
chr3 (4-40)||(9322426-9322462)
chr3 (1-37)||(14460555-14460591)
chr3 (1-37)||(44500135-44500171)
chr3 (3-39)||(53186377-53186413)
[»] chr5 (17 HSPs)
chr5 (39-205)||(28096245-28096411)
chr5 (81-204)||(32671043-32671168)
chr5 (82-128)||(33093359-33093405)
chr5 (1-38)||(39540718-39540755)
chr5 (1-46)||(42534384-42534429)
chr5 (1-37)||(23189067-23189103)
chr5 (1-36)||(4095029-4095064)
chr5 (2-37)||(10453652-10453687)
chr5 (1-35)||(16730094-16730128)
chr5 (1-38)||(31236587-31236624)
chr5 (2-38)||(2148126-2148162)
chr5 (1-33)||(8068323-8068355)
chr5 (1-37)||(9530733-9530769)
chr5 (1-37)||(13588864-13588900)
chr5 (1-37)||(25684434-25684470)
chr5 (1-33)||(32063529-32063561)
chr5 (1-37)||(43411517-43411553)
[»] chr6 (13 HSPs)
chr6 (113-200)||(31140317-31140404)
chr6 (91-205)||(26590356-26590470)
chr6 (38-176)||(26260474-26260610)
chr6 (82-158)||(24207600-24207676)
chr6 (1-40)||(34969803-34969842)
chr6 (1-39)||(18871294-18871332)
chr6 (1-38)||(29638733-29638770)
chr6 (1-37)||(1339225-1339261)
chr6 (1-37)||(35224829-35224865)
chr6 (1-36)||(32518748-32518783)
chr6 (1-37)||(9226572-9226608)
chr6 (1-41)||(26811129-26811169)
chr6 (81-121)||(35168514-35168554)
[»] chr1 (28 HSPs)
chr1 (113-205)||(15741495-15741587)
chr1 (112-205)||(5424761-5424852)
chr1 (1-38)||(43224644-43224681)
chr1 (1-37)||(10061528-10061564)
chr1 (1-37)||(14131352-14131388)
chr1 (81-197)||(31108051-31108167)
chr1 (1-37)||(40850392-40850428)
chr1 (1-37)||(48868062-48868098)
chr1 (1-37)||(52273719-52273755)
chr1 (2-37)||(3150185-3150220)
chr1 (1-36)||(31570972-31571007)
chr1 (2-37)||(41321377-41321412)
chr1 (2-37)||(47860755-47860790)
chr1 (1-44)||(52079803-52079846)
chr1 (1-35)||(9222856-9222890)
chr1 (1-38)||(2684339-2684376)
chr1 (1-34)||(27038914-27038947)
chr1 (1-38)||(37765252-37765289)
chr1 (1-38)||(48481220-48481257)
chr1 (1-37)||(1658549-1658585)
chr1 (1-37)||(5057570-5057606)
chr1 (1-37)||(9259816-9259852)
chr1 (1-37)||(29171536-29171572)
chr1 (1-37)||(33828864-33828900)
chr1 (1-37)||(33839066-33839102)
chr1 (1-37)||(39853330-39853366)
chr1 (1-37)||(49289229-49289265)
chr1 (1-37)||(50502344-50502380)
[»] chr2 (19 HSPs)
chr2 (82-176)||(42963124-42963218)
chr2 (1-43)||(2316832-2316874)
chr2 (1-39)||(3723939-3723977)
chr2 (1-37)||(13568212-13568248)
chr2 (1-37)||(16814851-16814887)
chr2 (1-37)||(16854131-16854167)
chr2 (1-37)||(19636006-19636042)
chr2 (1-37)||(19834599-19834635)
chr2 (1-37)||(37725922-37725958)
chr2 (1-37)||(40533622-40533658)
chr2 (1-36)||(28394439-28394474)
chr2 (1-35)||(21836656-21836690)
chr2 (1-38)||(36049463-36049500)
chr2 (1-37)||(1860298-1860334)
chr2 (1-37)||(7504022-7504058)
chr2 (1-37)||(18576300-18576336)
chr2 (1-37)||(35292882-35292918)
chr2 (1-37)||(36947482-36947518)
chr2 (1-37)||(39878919-39878955)
[»] scaffold0493 (1 HSPs)
scaffold0493 (1-46)||(1758-1803)
[»] scaffold0758 (1 HSPs)
scaffold0758 (110-200)||(4942-5031)
[»] chr8 (10 HSPs)
chr8 (3-45)||(196058-196100)
chr8 (3-45)||(310895-310937)
chr8 (1-38)||(36835713-36835750)
chr8 (1-45)||(464621-464665)
chr8 (1-37)||(28896905-28896941)
chr8 (1-36)||(35037834-35037869)
chr8 (1-35)||(7223854-7223888)
chr8 (1-38)||(1426326-1426363)
chr8 (1-37)||(14913844-14913880)
chr8 (1-37)||(43182724-43182760)
[»] scaffold0239 (1 HSPs)
scaffold0239 (1-37)||(15752-15788)
[»] scaffold0005 (1 HSPs)
scaffold0005 (2-39)||(291995-292032)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 28592274 - 28592440
Alignment:
Q  38 aaaaaataagaatatgaaaaatgcttagaaagtctgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttt 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592274 aaaaaataagaatatgaaaaatgcttagaaagtttgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttt 28592373  T
Q  138 taacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgat 204  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28592374 taacatcaagattacctcaatttttaggatcatacatatctaaaggatggatgaagtggtcattgat 28592440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 21924977 - 21924894
Alignment:
Q  122 aaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    |||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||| ||||    
T  21924977 aaaatgtctttgattttagcatcaagattacctcaaattctaggaccatagatatctaaaggagggatgaagtggtcatcgatg 21924894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 22685501 - 22685435
Alignment:
Q  77 ttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacat 143  Q
    |||||||||||||||||||||| ||||| ||| | |||||||| |||||||| | ||||||||||||    
T  22685501 ttaaaaaatgtgatattcaattacctaatatgtcttttttcaactaaaatgtatatggttttaacat 22685435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 3127056 - 3126933
Alignment:
Q  82 aaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaa 181  Q
    |||||||||||||||||||  || | | | ||||| |||||| |||| | |  ||||| |||||||| || | |||||| |||||||||| | |||||||    
T  3127056 aaatgtgatattcaattcctcaataggcccttttttaattaacatgtgtctccttttagcatcaagaatatcccaatttctaggatcatataaatctaaa 3126957  T
Q  182 ggatggatgaagtggtcattgatg 205  Q
    |||  |||||||||||||| ||||    
T  3126956 ggagagatgaagtggtcatcgatg 3126933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1282556 - 1282593
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1282556 gtacactcaaaattgtgagtgtaccatagaagttccca 1282593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18922947 - 18922984
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18922947 gtacactcaaaattgtgagtgtaccatagaagttccca 18922984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3062264 - 3062300
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3062264 gtacactcaaaattgtgagtgtaccatagaagttccc 3062300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9915529 - 9915565
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9915529 gtacactcaaaattgtgagtgtaccatagaagttccc 9915565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9923441 - 9923477
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9923441 gtacactcaaaattgtgagtgtaccatagaagttccc 9923477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42039673 - 42039709
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42039673 gtacactcaaaattgtgagtgtaccatagaagttccc 42039709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45196840 - 45196804
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  45196840 gtacactcaaaattgtgagtgtaccatagaagttccc 45196804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15091038 - 15091077
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaa 40  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  15091038 gtacactcaaaattgtgagtgtaccataaaagttcccaaa 15091077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25867276 - 25867311
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25867276 gtacactcaaaattgtgagtgtaccatagaagttcc 25867311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 2989361 - 2989419
Alignment:
Q  142 atcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcat 200  Q
    ||||||| ||||  ||||| |||||||||| ||||||||||||  ||||||||||||||    
T  2989361 atcaagaataccctaatttctaggatcataaatatctaaaggagagatgaagtggtcat 2989419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 22851266 - 22851332
Alignment:
Q  112 tttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatct 178  Q
    ||||||||||||||| ||   |||||||  ||||||| ||||| ||||| |||||||||||||||||    
T  22851266 tttttcaattaaaatatcaagggttttattatcaagaataccttaatttctaggatcatagatatct 22851332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24505494 - 24505530
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  24505494 gtacactcaaaattgtgagtgtaccataaaagttccc 24505530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 29540570 - 29540737
Alignment:
Q  39 aaaaataagaatatgaaaaatgcttagaaagtctgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggtttt 138  Q
    ||||||||| |||||| |||| | |||||||||||||| || ||||||||| ||||||||| |||| | | ||| |||||||||||||||||  ||||||    
T  29540570 aaaaataagcatatgagaaatacctagaaagtctgtctatagaaaatgtgagattcaattctctaataggtcatatttcaattaaaatgtctagggtttt 29540669  T
Q  139 aacatcaagattacctcaattttta-ggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    ||||| || | ||||||||||| || |||||| | |||||||||||| |||||| |||||||| ||||    
T  29540670 aacataaaaaatacctcaatttctatggatcacatatatctaaaggagggatgatgtggtcatcgatg 29540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42244573 - 42244531
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaa 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  42244573 gtacactcaaaattgtgagtgtaccatagaagttcccaaaaaa 42244531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44998781 - 44998826
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaataa 46  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  44998781 gtacactcaaaattgtgagtgtaccatagaagttcccagaaaataa 44998826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16004569 - 16004532
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16004569 gtacactcaaaattgtgagtgtaccatagaagttccca 16004532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 20135666 - 20135629
Alignment:
Q  163 aggatcatagatatctaaaggatggatgaagtggtcat 200  Q
    |||||||||||||||||||||| |||||||||||||||    
T  20135666 aggatcatagatatctaaaggagggatgaagtggtcat 20135629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27967881 - 27967922
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaa 42  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  27967881 gtacactcaaaattgtgagtgtaccatagaagttccctaaaa 27967922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36570019 - 36570056
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36570019 gtacactcaaaattgtgagtgtaccatagaagttccca 36570056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2526542 - 2526578
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2526542 gtacactcaaaattgtgagtgtaccatagaagttccc 2526578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10779027 - 10778991
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10779027 gtacactcaaaattgtgagtgtaccatagaagttccc 10778991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38955078 - 38955042
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38955078 gtacactcaaaattgtgagtgtaccatagaagttccc 38955042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21515360 - 21515395
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21515360 gtacactcaaaattgtgagtgtatcatagaagttcc 21515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33612894 - 33612935
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaa 42  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||    
T  33612894 gtacactcaaaattgtgggtgtaccatagaagttccccaaaa 33612935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46630681 - 46630648
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagtt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  46630681 gtacactcaaaattgtgagtgtaccatagaagtt 46630648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 15266907 - 15267070
Alignment:
Q  38 aaaaaataagaatatgaaaaatgcttagaaagtctgtctttaaaaaatgtgatattcaattccctaacatgac-atttttcaattaaaatgtctttggtt 136  Q
    |||||||||||||||||||||||| ||||| | | |||| || ||||||||| |||||||| |||||||   |  ||||| ||||||||||||| |||||    
T  15266907 aaaaaataagaatatgaaaaatgcatagaatgcccgtctatagaaaatgtgagattcaattacctaacaaacctttttttaaattaaaatgtctctggtt 15267006  T
Q  137 ttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcat 200  Q
    ||| ||||| || ||||  ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  15267007 ttagcatcatgaatacccaaatttttaggaccatagatatataaaggagggatgaagtggtcat 15267070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 1346711 - 1346654
Alignment:
Q  82 aaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggtttta 139  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  1346711 aaatgtgatattcaattccctaatatgtcatttttcaattaaaatgtatatggtttta 1346654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35320396 - 35320351
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaataa 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  35320396 gtacactcaaaattgtgagtgtaccatagaagttcccaaaaaataa 35320351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 49322151 - 49322060
Alignment:
Q  113 ttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    ||||||||||||||||||||| ||||| |||||||| || | ||| || || |||| || ||||| |||||| ||||||||||||||| ||||    
T  49322151 ttttcaattaaaatgtctttgattttagcatcaagaatatc-caacttctatgatcgtaaatatcaaaaggaaggatgaagtggtcatcgatg 49322060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49950960 - 49950923
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  49950960 gtacactcaaaattgtgagtgtaccatagaagttccca 49950923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 15085905 - 15085985
Alignment:
Q  118 aattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtc 198  Q
    |||||||| || | |||||||| ||||| ||||| |  ||||||||| ||||||||||| ||||| | |||||||||||||    
T  15085905 aattaaaacgtatatggttttagcatcatgattatccaaatttttagaatcatagatatataaagaagggatgaagtggtc 15085985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33830901 - 33830937
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  33830901 gtacactcaaaattgtgagtgtaccatagaagttccc 33830937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36019452 - 36019416
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36019452 gtacactcaaaattgtgagtgtaccatagaagttccc 36019416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50465843 - 50465879
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  50465843 gtacactcaaaattgtgagtgtaccatagaagttccc 50465879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51235892 - 51235928
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  51235892 gtacactcaaaattgtgagtgtaccatagaagttccc 51235928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52782195 - 52782159
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  52782195 gtacactcaaaattgtgagtgtaccatagaagttccc 52782159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 32720358 - 32720393
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  32720358 tacactcaaaattgtgagtgtaccatagaagttccc 32720393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35352226 - 35352191
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35352226 gtacactcaaaattgtgagtgtaccatagaagttcc 35352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44962975 - 44963012
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  44962975 gtacacttaaaattgtgagtgtaccatagaagttccca 44963012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48388795 - 48388762
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagtt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  48388795 gtacactcaaaattgtgagtgtaccatagaagtt 48388762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48925447 - 48925410
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  48925447 gtacactcaaaattgtgagtgtaccatagaaattccca 48925410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53376961 - 53376998
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  53376961 gtacattcaaaattgtgagtgtaccatagaagttccca 53376998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 347061 - 347097
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  347061 gtacactcaaaattatgagtgtaccatagaagttccc 347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 9322462 - 9322426
Alignment:
Q  4 cactcaaaattgtgagtgtaacatagaagttcccaaa 40  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  9322462 cactcaaaattgtgagggtaccatagaagttcccaaa 9322426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14460555 - 14460591
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  14460555 gtacactcaaaattatgagtgtaccatagaagttccc 14460591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44500171 - 44500135
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  44500171 gtacactcaaaattgtgagtgtaccatagaatttccc 44500135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 53186377 - 53186413
Alignment:
Q  3 acactcaaaattgtgagtgtaacatagaagttcccaa 39  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  53186377 acactcaaaattgtgagtgtaccatagaagtttccaa 53186413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 28096411 - 28096245
Alignment:
Q  39 aaaaataagaatatgaaaaatgcttagaaagtctgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggtttt 138  Q
    |||| |||||||||| ||||||  |||||||| ||||| ||  |||||||||||||||||   ||| ||||||||||||||||||||||||  | |||||    
T  28096411 aaaagtaagaatatgcaaaatgtctagaaagtatgtctataggaaatgtgatattcaattttgtaatatgacatttttcaattaaaatgtccctagtttt 28096312  T
Q  139 aacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    | |||||||| |||| | |||| || ||||||||| ||||||| ||  |||||||||||||||||||    
T  28096311 agcatcaagaataccccgatttctaagatcatagacatctaaatgagagatgaagtggtcattgatg 28096245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 32671168 - 32671043
Alignment:
Q  81 aaaatgtgatattcaattccctaacatgacatttttcaattaaaat--gtctttggttttaacatcaagattacctcaatttttaggatcatagatatct 178  Q
    ||||||||| || || |||| ||| |||  ||||| ||||||||||  |||| || |||||| || || | |||| |||||||| |||||||| ||||||    
T  32671168 aaaatgtgagatacatttccttaatatgttattttccaattaaaatatgtctatgattttaatataaaaaataccccaattttttggatcataaatatct 32671069  T
Q  179 aaaggatggatgaagtggtcattgat 204  Q
    |||||| |||||||||||||||||||    
T  32671068 aaaggagggatgaagtggtcattgat 32671043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 33093405 - 33093359
Alignment:
Q  82 aaatgtgatattcaattccctaacatgacatttttcaattaaaatgt 128  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  33093405 aaatgcgatattcaattccctaatatgtcatttttcaattaaaatgt 33093359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39540755 - 39540718
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39540755 gtacactcaaaattgtgagtgtaccatagaagttccca 39540718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42534429 - 42534384
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaataa 46  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||    
T  42534429 gtacactcaaaattgtgagtgtaccatagaagttccctaacaataa 42534384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23189103 - 23189067
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23189103 gtacactcaaaattgtgagtgtaccatagaagttccc 23189067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4095029 - 4095064
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4095029 gtacactcaaaattgtgagtgtaccatagaagttcc 4095064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 10453652 - 10453687
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  10453652 tacactcaaaattgtgagtgtaccatagaagttccc 10453687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16730094 - 16730128
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  16730094 gtacactcaaaattgtgagtgtaccatagaagttc 16730128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31236624 - 31236587
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  31236624 gtacactcaaaattgtgagtgtaccatagaaattccca 31236587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 2148162 - 2148126
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  2148162 tacacttaaaattgtgagtgtaccatagaagttccca 2148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8068355 - 8068323
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  8068355 gtacactcaaaattgtgagtgtaccatagaagt 8068323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9530733 - 9530769
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9530733 gtacactcaaaattgtgggtgtaccatagaagttccc 9530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13588900 - 13588864
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  13588900 gtacactcaaaattgtgggtgtaccatagaagttccc 13588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25684434 - 25684470
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  25684434 gtacactcaaaattatgagtgtaccatagaagttccc 25684470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32063561 - 32063529
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  32063561 gtacactcaaaattgtgagtgtaccatagaagt 32063529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43411553 - 43411517
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  43411553 gtacactcaaaattgttagtgtaccatagaagttccc 43411517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 31140404 - 31140317
Alignment:
Q  113 ttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcat 200  Q
    |||||||||||||||||| |||||||| |||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||    
T  31140404 ttttcaattaaaatgtctatggttttagcatcaagaatactccaatttctaggatcatagatatctaaaggatagatgaagtggtcat 31140317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 26590470 - 26590356
Alignment:
Q  91 attcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatg 190  Q
    ||||||||||||||||   |||||||||||||| |||| | ||| | || |||||||| |||| |||||| |||||||||  |||||||||||||  |||    
T  26590470 attcaattccctaacagaccatttttcaattaatatgtatctggctatagcatcaagaataccccaatttctaggatcatgtatatctaaaggataaatg 26590371  T
Q  191 aagtggtcattgatg 205  Q
    |||||||||| ||||    
T  26590370 aagtggtcatcgatg 26590356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 26260610 - 26260474
Alignment:
Q  38 aaaaaataagaatatgaaaaatgcttagaaagtctgtctttaaaaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttt 137  Q
    ||||||||||||||| |||||||| |||||||||| ||| ||| |||||||| ||||||||  ||||     ||||||||||||||||| ||||| ||||    
T  26260610 aaaaaataagaatat-aaaaatgcctagaaagtctatctataagaaatgtgagattcaattttctaatcgaccatttttcaattaaaatttcttt-gttt 26260513  T
Q  138 taacatcaagattacctcaatttttaggatcatagatat 176  Q
     | ||||||   |||| ||||||||||||||||| ||||    
T  26260512 cagcatcaatgataccccaatttttaggatcataaatat 26260474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 24207676 - 24207600
Alignment:
Q  82 aaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatcaagattacctcaat 158  Q
    |||||||| |||||||||||||| | | | ||||||||||||||||||||||||| || |||||||| || ||||||    
T  24207676 aaatgtgagattcaattccctaataggccctttttcaattaaaatgtctttggttgtagcatcaagaatatctcaat 24207600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34969803 - 34969842
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaa 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  34969803 gtacactcaaaattgtgagtgtaccatagaagttcccaaa 34969842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18871294 - 18871332
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18871294 gtacactcaaaattgtgagtgtaccatagaagttcccaa 18871332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29638770 - 29638733
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29638770 gtacactcaaaattgtgagtgtaccatagaagttccca 29638733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1339225 - 1339261
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1339225 gtacactcaaaattgtgagtgtaccatagaagttccc 1339261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35224865 - 35224829
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35224865 gtacactcaaaattgtgagtgtaccatagaagttccc 35224829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32518783 - 32518748
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32518783 gtacactcaaaattgtgagtgtaccatagaagttcc 32518748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9226572 - 9226608
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9226572 gtacactcaaaattgtgggtgtagcatagaagttccc 9226608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26811129 - 26811169
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaa 41  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  26811129 gtacattcaaaattgtgagtgtactatagaagttcccaaaa 26811169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 35168514 - 35168554
Alignment:
Q  81 aaaatgtgatattcaattccctaacatgacatttttcaatt 121  Q
    |||||||||||||||||||||||||| |  |||||||||||    
T  35168514 aaaatgtgatattcaattccctaacaggctatttttcaatt 35168554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 15741587 - 15741495
Alignment:
Q  113 ttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    |||| |||||||||||||||||||||| |||||||| || |  | ||| || |||||||||||||||||||| ||||||||| ||||| ||||    
T  15741587 ttttgaattaaaatgtctttggttttagcatcaagaatatcctagtttctaagatcatagatatctaaaggagggatgaagtagtcatcgatg 15741495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 5424852 - 5424761
Alignment:
Q  112 tttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcattgatg 205  Q
    ||||||||||||||| |  ||||||||| |||||| |||| | | |||| ||||||||||||| ||||||||| ||||||||||||||| ||||    
T  5424852 tttttcaattaaaatat--ttggttttagcatcaaaattatccctatttataggatcatagatttctaaaggagggatgaagtggtcatcgatg 5424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43224681 - 43224644
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  43224681 gtacactcaaaattgtgagtgtaccatagaagttccca 43224644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10061528 - 10061564
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10061528 gtacactcaaaattgtgagtgtaccatagaagttccc 10061564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14131388 - 14131352
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14131388 gtacactcaaaattgtgagtgtaccatagaagttccc 14131352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 31108167 - 31108051
Alignment:
Q  81 aaaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaa 180  Q
    ||||||||| |||||||| ||||| |   | |||||||| |||||| | | | |||||| ||| |||| |||||||||||  |||||||||||||| |||    
T  31108167 aaaatgtgagattcaatttcctaatagaccctttttcaaataaaatatttatagttttagcattaagaatacctcaatttcgaggatcatagatatttaa 31108068  T
Q  181 aggatggatgaagtggt 197  Q
    |||| |  |||||||||    
T  31108067 aggaggtttgaagtggt 31108051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40850392 - 40850428
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40850392 gtacactcaaaattgtgagtgtaccatagaagttccc 40850428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48868098 - 48868062
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  48868098 gtacactcaaaattgtgagtgtatcatagaagttccc 48868062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52273755 - 52273719
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  52273755 gtacactcaaaattgtgagtgtaccatagaagttccc 52273719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 3150220 - 3150185
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  3150220 tacactcaaaattgtgagtgtaccatagaagttccc 3150185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31571007 - 31570972
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31571007 gtacactcaaaattgtgagtgtaccatagaagttcc 31570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 41321377 - 41321412
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  41321377 tacactcaaaattgtgagtgtaccatagaagttccc 41321412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 47860790 - 47860755
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  47860790 tacactcaaaattgtgagtgtaccatagaagttccc 47860755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52079803 - 52079846
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaat 44  Q
    |||||||||||||| |||||||| |||||||||||||| |||||    
T  52079803 gtacactcaaaattatgagtgtatcatagaagttcccataaaat 52079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9222890 - 9222856
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  9222890 gtacactcaaaattgtgagtgtaccatagaagttc 9222856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2684339 - 2684376
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  2684339 gtacactcaaaattatgagtgtaccatagaagttccca 2684376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27038914 - 27038947
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagtt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  27038914 gtacactcaaaattgtgagtgtaccatagaagtt 27038947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37765289 - 37765252
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  37765289 gtacactcaaaattgtgagtgtaccataaaagttccca 37765252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48481220 - 48481257
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  48481220 gtacactcaaaattgtgggtgtaccatagaagttccca 48481257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1658585 - 1658549
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  1658585 gtacactcaaaattgtgggtgtaccatagaagttccc 1658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5057570 - 5057606
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  5057570 gtacactcaaaattgtgggtgtaccatagaagttccc 5057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9259852 - 9259816
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  9259852 gtacattcaaaattgtgagtgtaccatagaagttccc 9259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29171536 - 29171572
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  29171536 gtacactcaaaattgtgagtgtacgatagaagttccc 29171572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33828900 - 33828864
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  33828900 gtacacttaaaattgtgagtgtaccatagaagttccc 33828864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33839066 - 33839102
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  33839066 gtacacttaaaattgtgagtgtaccatagaagttccc 33839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39853330 - 39853366
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  39853330 gtacactcaaaattatgagtgtaccatagaagttccc 39853366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49289265 - 49289229
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  49289265 gtacactcaaaattgtgagtgtaccatagaaattccc 49289229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50502380 - 50502344
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||| |||| |||||||||||||    
T  50502380 gtacactcaaaattgtgaatgtaccatagaagttccc 50502344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 42963124 - 42963218
Alignment:
Q  82 aaatgtgatattcaattccctaacatgacatttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatat 176  Q
    ||||||||||||||||||||||| ||    |||||||||||||||||   |||||||| ||| || | ||| |||||||||||||||||||||||    
T  42963124 aaatgtgatattcaattccctaatatatgttttttcaattaaaatgtaggtggttttagcataaaaaatacttcaatttttaggatcatagatat 42963218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2316874 - 2316832
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaa 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  2316874 gtacactcaaaattgtgagtgtaccatagaagttccccaaaaa 2316832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3723977 - 3723939
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  3723977 gtacactcaaaattgtgagtgtaccatagaagttcccaa 3723939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13568248 - 13568212
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  13568248 gtacactcaaaattgtgagtgtaccatagaagttccc 13568212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16814887 - 16814851
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  16814887 gtacactcaaaattgtgagtgtatcatagaagttccc 16814851  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16854167 - 16854131
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  16854167 gtacactcaaaattgtgagtgtatcatagaagttccc 16854131  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19636006 - 19636042
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19636006 gtacactcaaaattgtgagtgtaccatagaagttccc 19636042  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19834599 - 19834635
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19834599 gtacactcaaaattgtgagtgtaccatagaagttccc 19834635  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37725922 - 37725958
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37725922 gtacactcaaaattgtgagtgtaccatagaagttccc 37725958  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40533622 - 40533658
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40533622 gtacactcaaaattgtgagtgtaccatagaagttccc 40533658  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28394439 - 28394474
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28394439 gtacactcaaaattgtgagtgtaccatagaagttcc 28394474  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21836656 - 21836690
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  21836656 gtacactcaaaattgtgagtgtaccatagaagttc 21836690  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36049500 - 36049463
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  36049500 gtacactcaaaattgtgaatgtaccatagaagttccca 36049463  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1860298 - 1860334
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  1860298 gtacactcaaaattgtgggtgtatcatagaagttccc 1860334  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7504058 - 7504022
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  7504058 gtacactcaaaattgtgggtgtaccatagaagttccc 7504022  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18576336 - 18576300
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  18576336 gtacactcaaaattgtgagtgtaccataaaagttccc 18576300  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35292882 - 35292918
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  35292882 gtacacttaaaattgtgagtgtaccatagaagttccc 35292918  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36947518 - 36947482
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  36947518 gtacactcaaaattgtgagtgtaccatagaaattccc 36947482  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39878955 - 39878919
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    |||||||||||||||||| |||| |||||||||||||    
T  39878955 gtacactcaaaattgtgaatgtaccatagaagttccc 39878919  T

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Target: scaffold0493 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1758 - 1803
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaataa 46  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  1758 gtacactcaaaattgtgagtgtaccatagaagttcccagaaaataa 1803  T

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Target: scaffold0758 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 5031 - 4942
Alignment:
Q  110 catttttcaattaaaatgtctttggttttaacatcaagattacctcaatttttaggatcatagatatctaaaggatggatgaagtggtcat 200  Q
    ||||||||||||||||||| |||| ||||| ||| || | || | |||||| ||||||||||||||| || |||| |||| ||||||||||    
T  5031 catttttcaattaaaatgtgtttgattttagcataaaaaatatc-caatttctaggatcatagatatatagaggagggataaagtggtcat 4942  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 196100 - 196058
Alignment:
Q  3 acactcaaaattgtgagtgtaacatagaagttcccaaaaaata 45  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  196100 acactcaaaattgtgagtgtaccatagaagttcccataaaata 196058  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 310937 - 310895
Alignment:
Q  3 acactcaaaattgtgagtgtaacatagaagttcccaaaaaata 45  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  310937 acactcaaaattgtgagtgtaccatagaagttcccataaaata 310895  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36835713 - 36835750
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36835713 gtacactcaaaattgtgagtgtaccatagaagttccca 36835750  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 464621 - 464665
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcccaaaaaata 45  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||    
T  464621 gtacactcaaaattgtgaatgtaccatagaagttctcaaaaaata 464665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28896941 - 28896905
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28896941 gtacactcaaaattgtgagtgtaccatagaagttccc 28896905  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35037834 - 35037869
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35037834 gtacactcaaaattgtgagtgtaccatagaagttcc 35037869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7223854 - 7223888
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  7223854 gtacactcaaaattgtgagtgtaccatagaagttc 7223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1426363 - 1426326
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccca 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  1426363 gtacactcaaaattgtgagtgtaccatagaatttccca 1426326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14913880 - 14913844
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||  |||||||||||||    
T  14913880 gtacactcaaaattgtgagtgtgccatagaagttccc 14913844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43182760 - 43182724
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43182760 gtacacttaaaattgtgagtgtaccatagaagttccc 43182724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15752 - 15788
Alignment:
Q  1 gtacactcaaaattgtgagtgtaacatagaagttccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15752 gtacactcaaaattgtgagtgtaccatagaagttccc 15788  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 291995 - 292032
Alignment:
Q  2 tacactcaaaattgtgagtgtaacatagaagttcccaa 39  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  291995 tacactcaaaattgtgagtgtaccatagaagtttccaa 292032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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