View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13643_low_2 (Length: 483)
Name: NF13643_low_2
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 2329789 - 2330201
Alignment:
| Q |
22 |
aagctatggaatcagaacactgtctctcacacaggaaacatatctctccacattgtcatttaaaatatcttcatttccatcacaacacatttcatcttac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2329789 |
aagctatggaatcagaacactgtctctcacacaggaaacatatctctccacattgtcatttaaaatctcttcatttccatcacaacacatttcatcttac |
2329888 |
T |
|
| Q |
122 |
acacatccatccctttcactgcttctaacatttcttcattattttctcaaacacctcttcactgttacttacttgcatcaatcctaattctctcattgat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329889 |
acacatccatccctttcactgcttctaacatttcttcattattttctcaaacacctcttcactgttacttacttgcatcaatcctaattctctcattgat |
2329988 |
T |
|
| Q |
222 |
ggctccacctgctagatcctatcatctacatggactcaaacttgcaacaataatcactgtgcttttcatctttttcttctgcatgctattttccaaatca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329989 |
ggctccacctgctagatcctatcatctacatggactcaaacttgcaacaataatcactgtgcttttcatctttttcttctgcatgctattttccaaatca |
2330088 |
T |
|
| Q |
322 |
ggtaattaaaaagctaccaccaacctcatacctattcaagctaaacaaaactgtttcaattttctgttgagaattaattctagaaatccgaatagttatt |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
2330089 |
ggtaattaaaaagctaccaccgtcctcatacctattcaagctaaacaaaactgtttcaattgtctgttgagaattatttgtagaaatccaaatagttatt |
2330188 |
T |
|
| Q |
422 |
ttcattcatagtt |
434 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2330189 |
ttcattcatagtt |
2330201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University