View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13643_low_3 (Length: 384)
Name: NF13643_low_3
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 37243235 - 37242857
Alignment:
| Q |
1 |
cttttggatctaaaaacgtgagtgactaaccgaaaaactatatttttnnnnnnncggaccaattatgtgaacgaataatatcagaggaccagaagtgcaa |
100 |
Q |
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| T |
37243235 |
cttttggatctaaaaacgtgagtgactaaccgaaaaactatatttttaaaaaaacggaccaattatgtgaacgaataatatcagaggaccagaagtgcaa |
37243136 |
T |
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| Q |
101 |
gtaagttatatnnnnnnnnnnnnnnnttgtaacattctcaaaggacaaca---ctataccccatcactggctagcacaacaaactggtctttgcttgtta |
197 |
Q |
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| T |
37243135 |
gtaagttatataaaaaaaaaaaaatattgtaacattttcaaaggacaacagtactataccccatcactggctagcacaacaaactggtctttgcttgtta |
37243036 |
T |
|
| Q |
198 |
tattcctttgtgttacttcaggcactgaaataagaccataatctttcatagaatagtcaccaaaagcccttgacatggctagtcccggagactcctcatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37243035 |
tattcctttgtgttacttcaggcactgaaataagaccataatctttcatagaatagtcaccaaaagcccttgacatggctagtcccggagactcctcatt |
37242936 |
T |
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| Q |
298 |
cggcaaccacacacggtgcaccccaggctcgtcgtctaggcagaagactcgcccttggcagtcaagtattctctctgct |
376 |
Q |
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| T |
37242935 |
cggcaaccacacacggtgcaccccaggctcgtcgtctaggcagaagactcgcccttggcagtcaagtattctctctgct |
37242857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 46256724 - 46256861
Alignment:
| Q |
154 |
taccccatcactggctagcacaacaaactggtctttgcttgttatattcctttgtgttacttcaggcactgaaataagaccataatctttcatagaatag |
253 |
Q |
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|||||||||| |||| ||||||| |||||||||||| || |||||||||| || || || ||||||||||||||||||||||||||||| ||| |||| |
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| T |
46256724 |
taccccatcagtggcaagcacaataaactggtctttactacttatattcctctgagtcacctcaggcactgaaataagaccataatctttaatacaataa |
46256823 |
T |
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| Q |
254 |
tcaccaaaagcccttgacatggctagtcccggagactc |
291 |
Q |
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|| |||||||||||||||||||| ||||| |||||||| |
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| T |
46256824 |
tctccaaaagcccttgacatggcaagtccaggagactc |
46256861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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