View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13643_low_4 (Length: 365)
Name: NF13643_low_4
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 94 - 348
Target Start/End: Complemental strand, 38195326 - 38195067
Alignment:
| Q |
94 |
atatatatatagcagcatcttgaatgaaataagcgtaccttcatgatagttgtttgatgaatgactttctctttggctgagttcaaaacttgtagacaac |
193 |
Q |
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| T |
38195326 |
atatatatatagcagcatcttgaatgaaataagcgtaccttcatgatagttgtttgatgaatgactttctctttggctgagttcaaaacttgtaaacaac |
38195227 |
T |
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| Q |
194 |
aaacaaaaggtggtgagagttgagaagggaaaggaatcatagtttataacatgcaacaatatagat-----attttaagaatgtgaatgtaatgtgtgca |
288 |
Q |
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| T |
38195226 |
aaacaaaaggtggtgagagttgagaagggaaaggaatcatagtttataacatgcaacaatatagatatttaattttaagaatgtgaatgtaatgtgtgca |
38195127 |
T |
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| Q |
289 |
agtgtcgagtgtgtaaggaagtataattatttgcagggaaagaaaatacacgtggttata |
348 |
Q |
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| T |
38195126 |
agtgtcgagtgtgtaaggaagtataattatttgcagggaaagaaaatacacgtggttata |
38195067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 38195412 - 38195358
Alignment:
| Q |
40 |
cactttgaagtttgaagcaaaatggtgacaaattaataatggagtgtgacacaca |
94 |
Q |
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| T |
38195412 |
cactttgaagtttgaagcaaaatggtgacaaattcataatggagtgtgacacaca |
38195358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 5996436 - 5996375
Alignment:
| Q |
285 |
tgcaagtgtcgagtgtgtaaggaagtataattatttgcagggaaagaaaatacacgtggtta |
346 |
Q |
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| T |
5996436 |
tgcaagtgtcgactgtgtaaggaagtataattcttttcagggaaatgaaatacacgtggtta |
5996375 |
T |
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