View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13643_low_8 (Length: 293)
Name: NF13643_low_8
Description: NF13643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13643_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 34385696 - 34385979
Alignment:
| Q |
1 |
tttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatgataaaa |
100 |
Q |
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| T |
34385696 |
tttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcaatatattcaattttaacattggtttataacttacaagtcctgatgataaaa |
34385795 |
T |
|
| Q |
101 |
aggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgaccaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34385796 |
aggctcagtagtttagtgcgtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgaccaaagtt |
34385895 |
T |
|
| Q |
201 |
atgatgcttcgtgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgatgatgt |
284 |
Q |
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| T |
34385896 |
atgatgcttcatgctactgatgattcacctattcagctaccaattgaacaatatcagcactgcagttgctttctttgctgatgt |
34385979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33098416 - 33098180
Alignment:
| Q |
1 |
tttatgcttcagttgttaattgttatagaaaattcatgcaacaagttcactatattcaattttaacattggtttataacttacaagtcctgatgataaaa |
100 |
Q |
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||||||||||||||||||||| | || ||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33098416 |
tttatgcttcagttgttaattttcatggaaaagtcatgcaacaagttcaatgtattcaattttaacattggtttataa-------gtcctgatgataaaa |
33098324 |
T |
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| Q |
101 |
aggctcagtagtttagtgc-----gtgtcttggtcagacattcaaaggataagcactagaagaaactaaggccggatgatcatcctcaatgcatcgacca |
195 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||| |
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| T |
33098323 |
aggctcagtactttagtgctcattgtggcttggtcagacattcaaaggataagcactacaagaaaccaagaccagatgatcatcctcattgcatcgacca |
33098224 |
T |
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| Q |
196 |
aagttatgatgcttcgtgctactgatgattcacctattcagcta |
239 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
33098223 |
aagttatgatgcttcatgctactgataattcacctattcagcta |
33098180 |
T |
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