View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13644_high_2 (Length: 536)
Name: NF13644_high_2
Description: NF13644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13644_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 39129150 - 39128610
Alignment:
| Q |
1 |
tcatcataagaaactggattcctcacttctgaaggctgagtaattttctctgaccatgatgtgtgccgcttaaaattgaaatggccatcatcaccatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39129150 |
tcatcataagaaactggattcctcacttctgaaggctgagtaattttctctgaccatgatgtgtgccgcttaaaattgaaatggccatcatcaccaccac |
39129051 |
T |
|
| Q |
101 |
caacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgtgnnnnnnnnnnnnnnnncaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39129050 |
caacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgtgaaaaaaaaccaaaaaacaa |
39128951 |
T |
|
| Q |
201 |
taaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacaataaacaccaagaaaatagacatttaaaaatctaatcaggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128950 |
taaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacgataaacaccaagaaaatagacatttaaaaatctaatcaggaaa |
39128851 |
T |
|
| Q |
301 |
aacaaagttaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaacataaacacctagt----ag |
396 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
39128850 |
aacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaacataaacacctggtagtaag |
39128751 |
T |
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| Q |
397 |
taacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctcaactatggcattcactc-gac |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39128750 |
taacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctcaactatggcattcactcagac |
39128651 |
T |
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| Q |
496 |
cacacaaaaatgaaaccttgttaaggaaatttcaaacaaaa |
536 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128650 |
cacacaaaaatgaaaccttgttaaggaaatttcaaacaaaa |
39128610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 39495951 - 39496094
Alignment:
| Q |
1 |
tcatcataagaaactggattcctcacttctgaaggctgagtaattttctctgaccatgatgtgtgccgcttaaaattgaaatggccatcatcaccatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |||| |||| ||| |
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| T |
39495951 |
tcatcataagaaactggattcctcacttctgaaggccaagtacttttctctgacgatgatgtgtgccgctt---------------atcagaaccaccac |
39496035 |
T |
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| Q |
101 |
caacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
159 |
Q |
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||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
39496036 |
caacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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