View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13644_high_6 (Length: 320)

Name: NF13644_high_6
Description: NF13644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13644_high_6
NF13644_high_6
[»] chr1 (2 HSPs)
chr1 (32-320)||(43564044-43564332)
chr1 (27-320)||(43475956-43476249)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 32 - 320
Target Start/End: Complemental strand, 43564332 - 43564044
Alignment:
Q  32 tttggttccattgaaattcacggtttttagatggaagagtattgcaggacagaatcatgacgaagggtgctctgaaagcaaggggtgtcttagcagataa 131  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43564332 tttggttccatttaaattcacggtttttagatggaagagtattgcaggacagaatcatgacgaagggtgctctgaaagcaaggggtgtcttagcagataa 43564233  T
Q  132 tgccgataatccctgcgtgttctgctatgctgcagaagaaagtagtgatcatcttctcttttcacaccctttcgcttacaatgtgcggacttcaatctac 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43564232 tgccgataatccctgcgtgttctgctatgctgcagaagaaagtagtgatcatcttctcttttcacgccctttcgcttacaatgtgcggacttcaatctac 43564133  T
Q  232 ggctggatgggattcaaaggcgcttatgcaaattgcagtgtatatcactttactcagtcatcatcacattcttgctagaggaagaagac 320  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43564132 ggctggatgggattcaaaggcgcttatgcaaatagcagtgtagatcactttactcagtcatcatcacattcttgctagaggaagaagac 43564044  T

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Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 27 - 320
Target Start/End: Original strand, 43475956 - 43476249
Alignment:
Q  27 agcgatttggttccattgaaattcacggtttttagatggaagagtattgcaggacagaatcatgacgaagggtgctctgaaagcaaggggtgtcttagca 126  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  43475956 agcggtttggttccattgaaattcacggtttttagatggaagagtattgcaggacataatcatgacgatgggtgctctgaaagcaaggggtgtctaagca 43476055  T
Q  127 gataatgccgataatccctgcgtgttctgctatgctgcagaagaaagtagtgatcatcttctcttttcacaccctttcgcttacaatgtgcggacttcaa 226  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  43476056 tataatgtcgataatccctgcgtgttctgctatgctgcagaagaaagtagtgatcatattctcttttcacgccctttcgcttacaatgtgcagacttcaa 43476155  T
Q  227 tctacggctggatgggattcaaaggcgcttatgcaaattgcagtgtatatcactttactcagtcatcatcacattcttgctagaggaagaagac 320  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  43476156 tctacggctggatggaattcaaaggcgcttatgcaaatagcagtgtagatcactttactcagtcatcatcacattcttgctagaggaaaaagac 43476249  T

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