View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13644_high_7 (Length: 315)

Name: NF13644_high_7
Description: NF13644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13644_high_7
NF13644_high_7
[»] chr3 (3 HSPs)
chr3 (14-314)||(47987543-47987843)
chr3 (14-314)||(47996830-47997130)
chr3 (14-314)||(48006117-48006417)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 47987543 - 47987843
Alignment:
Q  14 gagatagacagggagaggattaagtagagaactgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttcgcaagct 113  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47987543 gagacagacagggagaggattaagtagagaaccgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttctcaagct 47987642  T
Q  114 cttttaaggtaaacacaaactcctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987643 cttttaaggtaaacacaaactcctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 47987742  T
Q  214 aatcagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 313  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987743 aattagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 47987842  T
Q  314 t 314  Q
    |    
T  47987843 t 47987843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 47996830 - 47997130
Alignment:
Q  14 gagatagacagggagaggattaagtagagaactgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttcgcaagct 113  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47996830 gagacagacagggagaggattaagtagagaaccgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttctcaagct 47996929  T
Q  114 cttttaaggtaaacacaaactcctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47996930 cttttaaggtaaacacaaactcctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 47997029  T
Q  214 aatcagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 313  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47997030 aattagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 47997129  T
Q  314 t 314  Q
    |    
T  47997130 t 47997130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 48006117 - 48006417
Alignment:
Q  14 gagatagacagggagaggattaagtagagaactgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttcgcaagct 113  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48006117 gagacagacagggagaggattaagtagagaaccgtgtaattccaccggtttacatacattgaatcagcatcgttttttgttgcgtttattttctcaagct 48006216  T
Q  114 cttttaaggtaaacacaaactcctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48006217 cttttaaggtaaacacaaactcctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttac 48006316  T
Q  214 aatcagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 313  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48006317 aattagggtttcgacgtgcattgataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttct 48006416  T
Q  314 t 314  Q
    |    
T  48006417 t 48006417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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