View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13644_high_8 (Length: 314)
Name: NF13644_high_8
Description: NF13644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13644_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 22426669 - 22426975
Alignment:
| Q |
1 |
attcttgtggactttgtgaaatttccaaaaatagagcaacaagattggtttgctggagtttcatgtttacaacctcagcttgtgatttggctagttgtgc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22426669 |
attcttgaggactttgtgaaatttccaaaaatagagcaacaagattggtttgttggagtttcatgtttacaacctcagcttgtgatttggctagttgtgc |
22426768 |
T |
|
| Q |
101 |
ttgaagctcattgacttgcttttggagttggcaaattgctcctgcacaaccataaactgggtctctaactcttgcactagcctcataaaccatgcttgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22426769 |
ttgaagctcattgacttgcttttggagttggcaaattgctcctgcacaaccataaactgggtctctaactcttgcactagcctcataaaccatgcttgtc |
22426868 |
T |
|
| Q |
201 |
actgcatcagctctttgatcttctggaagttcctatttttcaacaacaaaaagtttagatgataaaatccataattcagagttcggttaaaagatcagta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
22426869 |
actgcatcagctctttgatcttctggaagttcctattttgaaacaacaaaaagtttagatgataaaatccataattcagaattcggttaaaagataagta |
22426968 |
T |
|
| Q |
301 |
taatcta |
307 |
Q |
| |
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|||||| |
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| T |
22426969 |
aaatcta |
22426975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 39792617 - 39792473
Alignment:
| Q |
74 |
ctcagcttgtgatttggctagttgtgcttgaagctcattgacttgcttttggagttggcaaattgctcctgcacaaccataaactgggtctctaactctt |
173 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||| |||||||| |||||||| | ||| |
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| T |
39792617 |
ctcagcttgtgacttagctagttgtgcttgaagctcattgacttccttttggaggtgacaaattgcacctgcacatccataaacagggtctcttatcctt |
39792518 |
T |
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| Q |
174 |
gcactagcctcataaaccatgcttgtcactgcatcagctctttga |
218 |
Q |
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| T |
39792517 |
gcactggcttcataaaccatgctactaactgcatcagctctttga |
39792473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 43140955 - 43141095
Alignment:
| Q |
74 |
ctcagcttgtgatttggctagttgtgcttgaagctcattgacttgcttttggagttggcaaattgctcctgcacaaccataaactgggtctctaactctt |
173 |
Q |
| |
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||||||||||| ||||||||| |||| ||| | |||| | ||||| ||||| ||||| || ||||| |||||||| |||||||||||||| || | ||| |
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| T |
43140955 |
ctcagcttgtgctttggctagctgtgtttgtaactcactaacttgtttttgaagttgacatattgcacctgcacacccataaactgggtcccttatcctt |
43141054 |
T |
|
| Q |
174 |
gcactagcctcataaaccatgcttgtcactgcatcagctct |
214 |
Q |
| |
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||| | || |||||||||||||| | |||||||| ||||| |
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| T |
43141055 |
gcatttgcttcataaaccatgctgcttactgcatctgctct |
43141095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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