View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13644_low_1 (Length: 832)

Name: NF13644_low_1
Description: NF13644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13644_low_1
NF13644_low_1
[»] chr6 (3 HSPs)
chr6 (12-144)||(7373782-7373914)
chr6 (763-816)||(7368655-7368708)
chr6 (158-191)||(35129628-35129661)
[»] chr4 (4 HSPs)
chr4 (17-310)||(48517552-48517841)
chr4 (66-310)||(48514681-48514924)
chr4 (105-310)||(12704760-12704967)
chr4 (40-112)||(12703803-12703875)
[»] chr5 (4 HSPs)
chr5 (40-310)||(37075296-37075564)
chr5 (161-191)||(25215291-25215321)
chr5 (161-191)||(25279442-25279472)
chr5 (44-124)||(37411156-37411237)
[»] chr8 (3 HSPs)
chr8 (43-310)||(33293492-33293760)
chr8 (17-89)||(19488692-19488763)
chr8 (158-191)||(19954272-19954305)
[»] chr7 (1 HSPs)
chr7 (763-816)||(45632333-45632386)
[»] chr3 (5 HSPs)
chr3 (765-816)||(53159591-53159642)
chr3 (410-508)||(11766589-11766687)
chr3 (405-443)||(10442623-10442661)
chr3 (158-191)||(48432408-48432441)
chr3 (158-191)||(48435890-48435923)
[»] chr2 (2 HSPs)
chr2 (205-310)||(14918366-14918471)
chr2 (158-191)||(14104590-14104623)
[»] scaffold0018 (1 HSPs)
scaffold0018 (158-191)||(171777-171810)
[»] chr1 (3 HSPs)
chr1 (147-192)||(6789660-6789705)
chr1 (158-191)||(2493880-2493913)
chr1 (158-191)||(24159861-24159894)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 7373914 - 7373782
Alignment:
Q  12 cgaagaatattgatatagttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttgggga 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7373914 cgaacaatattgatatagttgagggtgtttggtttgatgagttctctttgtgcaaagagtactcatagtcaagtttgaaaaggttgttttatcttgggga 7373815  T
Q  112 cgacgaggtaagaaaaatttgttgcatcattca 144  Q
    |||||||||||||||||||||||||||||||||    
T  7373814 cgacgaggtaagaaaaatttgttgcatcattca 7373782  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 763 - 816
Target Start/End: Complemental strand, 7368708 - 7368655
Alignment:
Q  763 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactg 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368708 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactg 7368655  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 35129661 - 35129628
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    ||||||||||||||||||||||||||||||||||    
T  35129661 aacgtcttaaagagagcgacctagtctgcgactc 35129628  T

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Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 48517841 - 48517552
Alignment:
Q  17 aatattgatatagttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacg 116  Q
    ||||||| |||| ||||||||||| ||||||  ||||| |||||||||| |||||| ||||| | |||||||||| || ||||||||| |||||||||||    
T  48517841 aatattggtataattgagggtgtt-ggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacg 48517743  T
Q  117 aggtaagaaaaatttgttgcatcattcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaa 216  Q
    ||| |||||| || |||||||  ||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| ||    ||| |||||||||  | |    
T  48517742 aggcaagaaagatctgttgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcagccccaattttgtatctaatgata 48517643  T
Q  217 ttattttgtgtgtgttagagtttgattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 310  Q
    |||||||   ||||||| ||||||||| |||  ||||||||||| |||| |||||| | |  | ||||||||||||||||||||||||||||||    
T  48517642 ttatttt---tgtgttaaagtttgattctttgcagaaatgatttcaagtgttcgacatgttcatcaacaatttaagtgttcaagaaatgttcca 48517552  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 66 - 310
Target Start/End: Complemental strand, 48514924 - 48514681
Alignment:
Q  66 gagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatcattcatgcagaggcgcggaacgtctt 165  Q
    |||||| |||||| |||| ||||||| |||||||| ||| |||||||||||||| |||||| || | ||| |  ||||| |||||| |||||||||||||    
T  48514924 gagagttctcatactcaaatttgaaagggttgtttcatcctggggacgacgaggcaagaaagatctattgtacaattcaggcagagccgcggaacgtctt 48514825  T
Q  166 aaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgttagagtttgattatttaaagaaatgatttaaagt 265  Q
    |||||||||||||||||||||||||| ||    ||| |||||| ||| | |||||||| | ||||||| ||||||||| |||  ||||||||||| ||||    
T  48514824 aaagagagcgacctagtctgcgactcagccccaattttgtatcgaacgatattatttt-tttgtgttaaagtttgattctttgcagaaatgatttcaagt 48514726  T
Q  266 attcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 310  Q
     |||||| | |  | ||||||||||||||||||||||||| ||||    
T  48514725 gttcgacatgttcaacaacaatttaagtgttcaagaaatggtcca 48514681  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 105 - 310
Target Start/End: Original strand, 12704760 - 12704967
Alignment:
Q  105 ttggggacgacgaggtaagaaaaatttgttgcatcattcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtg 204  Q
    |||||||| |||||| |||||| |  ||||||| |||| | |||||| |||  || ||||||||||||||||||||||| ||||||| ||    ||| ||    
T  12704760 ttggggacaacgaggcaagaaataaatgttgcaccattgaggcagagccgcaaaaggtcttaaagagagcgacctagtccgcgactcagcccgaattttg 12704859  T
Q  205 tatctaacaaaattattttgtgtgtgttagagtttg-attatttaaagaaatgatttaaagtattcgacgtatgtagcaacaattt-aagtgttcaagaa 302  Q
    ||||||||| ||||||||||||||  ||  |||||| ||| |||  |||| || ||| |||| ||||||  ||| | |||| |||| |||||||||||||    
T  12704860 tatctaacataattattttgtgtgctttcaagtttgaattttttgcagaattgttttcaagtgttcgacagatgcaacaactatttaaagtgttcaagaa 12704959  T
Q  303 atgttcca 310  Q
    ||||||||    
T  12704960 atgttcca 12704967  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 12703803 - 12703875
Alignment:
Q  40 ttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggac 112  Q
    |||||||| ||| |||||||||||||||||||| ||||| | ||||||| || |||||||||||  |||||||    
T  12703803 ttggtttggtgaattctctttgtgcagagagtattcatacttaagtttggaagggttgttttattctggggac 12703875  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 37075564 - 37075296
Alignment:
Q  40 ttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatc 139  Q
    |||||||| ||||||||||||||||| |||||||||||| | ||||||| || |  ||||||||| ||| |||||||||  |||||| || ||||||| |    
T  37075564 ttggtttggtgagttctctttgtgcatagagtactcatacttaagtttgtaatgaatgttttatcctggagacgacgagccaagaaatatatgttgcacc 37075465  T
Q  140 attcatgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgttagagttt 239  Q
    ||||| |||||| ||| ||||||||||||||||||||| || |||   |||| | | | ||| ||||||||||||| ||||||  | ||| ||| |||||    
T  37075464 attcaggcagagccgcagaacgtcttaaagagagcgacataatctataactcagttcaaattttgtatctaacaaagttattt--tatgttttaaagttt 37075367  T
Q  240 gattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 310  Q
    |||| |||  ||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  37075366 gattctttgcagaaatgatttcaagtgttcgacatatgcagcaacaatttaagtgttcaagaaatgttcca 37075296  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 25215291 - 25215321
Alignment:
Q  161 gtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||||||||    
T  25215291 gtcttaaagagagcgacctagtctgcgactc 25215321  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 25279442 - 25279472
Alignment:
Q  161 gtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||||||||    
T  25279442 gtcttaaagagagcgacctagtctgcgactc 25279472  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 37411156 - 37411237
Alignment:
Q  44 tttgatgagttctctttgtgcagagagtactcata-gtcaagtttgaaaaggttgttttatcttggggacgacgaggtaaga 124  Q
    |||| ||||||||||||||| ||||||||||||||  | ||||||   |||| ||||||||| ||| ||||| |||||||||    
T  37411156 tttggtgagttctctttgtgaagagagtactcatattttaagttttggaaggctgttttatcctggagacgatgaggtaaga 37411237  T

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Target: chr8 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 43 - 310
Target Start/End: Complemental strand, 33293760 - 33293492
Alignment:
Q  43 gtttgatgagttctctttgtgcagagagtactcatagtcaagtttgaaaaggttgttttatcttggggacgacgaggtaagaaaaatttgttgcatcatt 142  Q
    ||||| || ||||||||||||||| |||||||||||  |||||||  ||||| ||||||||  ||| |||||||||| |||||| || ||||| |  |||    
T  33293760 gtttgctgggttctctttgtgcagtgagtactcatacacaagttttgaaaggctgttttattatggagacgacgaggcaagaaagatatgttgtactatt 33293661  T
Q  143 catgcagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcggcttatattgtgtatctaacaaaattattttgtgtgtgtt-agagtttga 241  Q
    || |||||| | |||||| | ||||| |||| ||| ||||||||||||| ||  | ||| ||||| |||| |||||||||| |||||||| |||||||||    
T  33293660 caggcagagccacggaacatattaaaaagagtgacgtagtctgcgactcagcccaaattttgtatttaacgaaattattttttgtgtgttaagagtttga 33293561  T
Q  242 ttatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaagtgttcaagaaatgttcca 310  Q
    || |||  |||||| |||| |||| ||||| ||||| ||||||| ||||||||||||||||||||||||    
T  33293560 ttttttgcagaaataatttcaagtgttcgatgtatgcagcaacattttaagtgttcaagaaatgttcca 33293492  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 19488692 - 19488763
Alignment:
Q  17 aatattgatatagttgagggtgtttggtttgatgagttctctttgtgcagagagtactcatagtcaagtttga 89  Q
    |||||||||||  ||||||||||| | |||| ||||||||| ||||||| | |||||||||||||||||||||    
T  19488692 aatattgatatgattgagggtgttggttttg-tgagttctcgttgtgcaaatagtactcatagtcaagtttga 19488763  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 19954305 - 19954272
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    ||||||||||||||||||| ||||||||||||||    
T  19954305 aacgtcttaaagagagcgatctagtctgcgactc 19954272  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 763 - 816
Target Start/End: Complemental strand, 45632386 - 45632333
Alignment:
Q  763 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactg 816  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  45632386 ttaaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactg 45632333  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 765 - 816
Target Start/End: Original strand, 53159591 - 53159642
Alignment:
Q  765 aaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactg 816  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  53159591 aaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactg 53159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 508
Target Start/End: Complemental strand, 11766687 - 11766589
Alignment:
Q  410 aaaaatcgtcaaaactaaaattaagaatgaaataggtatagcaaagtttgatgatgtgctttaccgttatcgtggagcttgctttgagtagtttcattt 508  Q
    ||||||||||||| |||||| ||||||||||||| | | | || ||||  |||||||| |||||||| ||||||||| ||||||| ||| |||||||||    
T  11766687 aaaaatcgtcaaacctaaaactaagaatgaaataagcaaaacatagttcaatgatgtgttttaccgtaatcgtggagtttgctttcagtggtttcattt 11766589  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 405 - 443
Target Start/End: Original strand, 10442623 - 10442661
Alignment:
Q  405 gaaacaaaaatcgtcaaaactaaaattaagaatgaaata 443  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  10442623 gaaacagaaatcgtcaaaactaaaaataagaatgaaata 10442661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 48432441 - 48432408
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||| |||||||    
T  48432441 aacgtcttaaagagagcgacctagtccgcgactc 48432408  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 48435890 - 48435923
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||| |||||||    
T  48435890 aacgtcttaaagagagcgacctagtccgcgactc 48435923  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 14918471 - 14918366
Alignment:
Q  205 tatctaacaaaattattttgtgtgtgttagagtttgattatttaaagaaatgatttaaagtattcgacgtatgtagcaacaatttaa-gtgttcaagaaa 303  Q
    ||||||||||||||||||| ||||||||  ||| ||||| |||  |||||| |||  |||| |||||   ||| ||||||||||||| ||||||||||||    
T  14918471 tatctaacaaaattatttt-tgtgtgttcaagtatgattttttgcagaaataattccaagtgttcgatagatgcagcaacaatttaaagtgttcaagaaa 14918373  T
Q  304 tgttcca 310  Q
    |||||||    
T  14918372 tgttcca 14918366  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 14104623 - 14104590
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||| |||||||    
T  14104623 aacgtcttaaagagagcgacctagtccgcgactc 14104590  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 171777 - 171810
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    ||||||||||||||||||||||||||||||||||    
T  171777 aacgtcttaaagagagcgacctagtctgcgactc 171810  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 6789660 - 6789705
Alignment:
Q  147 cagaggcgcggaacgtcttaaagagagcgacctagtctgcgactcg 192  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||    
T  6789660 cagagtcgcagaacgtcttaaagagagcaacctagtctgcgactcg 6789705  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 2493880 - 2493913
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    ||||||||||||||||||||||||| ||||||||    
T  2493880 aacgtcttaaagagagcgacctagtttgcgactc 2493913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 24159861 - 24159894
Alignment:
Q  158 aacgtcttaaagagagcgacctagtctgcgactc 191  Q
    |||||||||||||||||||||||||| |||||||    
T  24159861 aacgtcttaaagagagcgacctagtccgcgactc 24159894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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