View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13645_low_1 (Length: 615)
Name: NF13645_low_1
Description: NF13645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13645_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Complemental strand, 36423262 - 36422674
Alignment:
| Q |
19 |
atcttctactctcttcaactggtgttccataccaccctgaagcgactggaaggcatgcaaggtctgctaaattcacaccgcgttttctaatcgtgctgtt |
118 |
Q |
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| T |
36423262 |
atcttctattctcttcaaccggtgttccataccaccctgaagcgactggaaggcatgcaaggtctgctaaattcacaccgcgttttctaatcgtgctgtt |
36423163 |
T |
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| Q |
119 |
aaactcgccactcttcaatggaacattgagtacagcaaccatttcctcaagtgtcattgtagggtatccagaagaacctggccttgtttcatggttggtt |
218 |
Q |
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| T |
36423162 |
aaactcgccactcttcaatggaacatcgagtacagcaaccatttcctcaagtgtcattgtagggtatccagaagaacctggccttgtttcatggttggtt |
36423063 |
T |
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| Q |
219 |
atttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagtgcaaccacagaggctttcctaggaagtaatggttgaccatttttcc |
318 |
Q |
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| T |
36423062 |
atttcacttgtgctaagatcaacagtgagagtgtgagtgacacgtttatcaagtgcaaccacagaggctttcctaggaagtaatggttgaccatttttcc |
36422963 |
T |
|
| Q |
319 |
atttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422962 |
atttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgtttgaggacttaaaaagagggtgtgtcgagaggatcgcacg |
36422863 |
T |
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| Q |
419 |
aactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcatggtttggttgttgatggcgagtggagaaggatggtttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36422862 |
aactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcatggtttggttgttgacggcgagtggagaaggatggtttg |
36422763 |
T |
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| Q |
519 |
tggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgttgcagtctagagcttctttgttgaatgatga |
607 |
Q |
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| T |
36422762 |
tggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgttgcagtctagagcttctttgttgaatgatga |
36422674 |
T |
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