View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13645_low_2 (Length: 452)

Name: NF13645_low_2
Description: NF13645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13645_low_2
NF13645_low_2
[»] chr4 (6 HSPs)
chr4 (19-450)||(54422856-54423285)
chr4 (119-366)||(32497849-32498096)
chr4 (200-360)||(29016551-29016711)
chr4 (242-381)||(1503707-1503846)
chr4 (275-327)||(23601649-23601701)
chr4 (344-382)||(1361986-1362024)
[»] chr1 (7 HSPs)
chr1 (23-450)||(20127836-20128269)
chr1 (167-445)||(12460234-12460512)
chr1 (155-309)||(44138115-44138269)
chr1 (215-382)||(27644871-27645038)
chr1 (242-369)||(50181263-50181390)
chr1 (326-381)||(4049979-4050034)
chr1 (287-369)||(27465299-27465381)
[»] chr7 (5 HSPs)
chr7 (119-366)||(12352267-12352514)
chr7 (200-387)||(46598183-46598370)
chr7 (119-366)||(41146057-41146304)
chr7 (215-387)||(31800882-31801053)
chr7 (326-378)||(512360-512412)
[»] chr6 (3 HSPs)
chr6 (260-372)||(21950903-21951015)
chr6 (278-444)||(16861703-16861869)
chr6 (125-173)||(32095436-32095484)
[»] chr5 (4 HSPs)
chr5 (119-366)||(23149572-23149819)
chr5 (260-369)||(29291350-29291459)
chr5 (218-309)||(7273424-7273515)
chr5 (248-441)||(42578219-42578412)
[»] scaffold0703 (1 HSPs)
scaffold0703 (167-445)||(1126-1404)
[»] chr8 (4 HSPs)
chr8 (260-369)||(35612049-35612158)
chr8 (116-351)||(11625761-11625997)
chr8 (116-315)||(9182312-9182512)
chr8 (290-369)||(42199359-42199438)
[»] chr2 (6 HSPs)
chr2 (260-369)||(4018648-4018757)
chr2 (260-369)||(24465738-24465847)
chr2 (260-372)||(8072564-8072675)
chr2 (251-369)||(646968-647086)
chr2 (125-228)||(42704386-42704489)
chr2 (399-445)||(19932460-19932506)
[»] chr3 (2 HSPs)
chr3 (248-380)||(6864147-6864279)
chr3 (215-354)||(51141682-51141821)
[»] scaffold0010 (1 HSPs)
scaffold0010 (242-351)||(238236-238345)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 54423285 - 54422856
Alignment:
Q  19 cgggcaagcaataaattatggtgaatcggctattgcattcagctctaat------catgacaccgtggctgatatcacatctctccttggtgtatttgcg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||| |||||    
T  54423285 cgggcaagcaataaattatggtgaatcggctattgcattcagctctaatactcaccatgaaaccgtggctgatatcacatctctccttggtgtacttgcg 54423186  T
Q  113 gaaattggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54423185 gaaattggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaagaccgcatctggaaaaactgtc 54423086  T
Q  213 ggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcat 312  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423085 agtcttggagtgctcgctccctatcacgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcat 54422986  T
Q  313 tccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtgggga 412  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  54422985 tccgacttctttatgtgaagaaatggacaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaac--------gtgggga 54422894  T
Q  413 aaactcactctacataaaagtcttggtggcctttgctt 450  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  54422893 aaactcactttacataaaagtcttggtggccttggctt 54422856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 366
Target Start/End: Original strand, 32497849 - 32498096
Alignment:
Q  119 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 218  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  32497849 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 32497948  T
Q  219 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 318  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  32497949 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 32498048  T
Q  319 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  32498049 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 32498096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 360
Target Start/End: Original strand, 29016551 - 29016711
Alignment:
Q  200 tggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgg 299  Q
    ||||| || ||| ||||||||||  |||  ||||| || |||||||| ||||| ||| | || ||||| || || |||||||| || || ||||||||||    
T  29016551 tggaagaagtgttggtcttggagctctcagtccctttctcgtgcaggtaaagaggttcttattaaatcggttgcgcaagctattccttcatattgtatgg 29016650  T
Q  300 gtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttta 360  Q
    ||||||| || || ||| | ||||||||||| || || ||| | |||||||| ||||||||    
T  29016651 gtgcttttcttatcccatcctctttatgtgatgagatagaatgaatgatgaactcatttta 29016711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 1503846 - 1503707
Alignment:
Q  242 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 341  Q
    ||||| ||||| ||||| |||||||| || || |||| ||| || |||||||| ||| ||| ||| ||  |||| || |||||  | |||||||| ||||    
T  1503846 gcaggtaaagaggttttaatcaaatcagttgcccaagttattccttcttattgcatgagtgattttcttcttcctacctcttttggagaagaaattgaaa 1503747  T
Q  342 ggatgatgaattcattttactggggttcaaagaaaaatgg 381  Q
    ||||| |||| || |||||||  |||||||||||||||||    
T  1503746 ggatgctgaactctttttactcaggttcaaagaaaaatgg 1503707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 23601701 - 23601649
Alignment:
Q  275 caagctataccctcttattgtatgggtgctttcctcattccaacttctttatg 327  Q
    |||||||| || ||||||||||||||||| || |||||||| |||||||||||    
T  23601701 caagctatcccttcttattgtatgggtgcctttctcattcctacttctttatg 23601649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 1361986 - 1362024
Alignment:
Q  344 atgatgaattcattttactggggttcaaagaaaaatggt 382  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  1361986 atgatgaattcattttattggggttcaaagaagaatggt 1362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 450
Target Start/End: Original strand, 20127836 - 20128269
Alignment:
Q  23 caagcaataaattatggtgaatcggctattgcattcagctctaat------catgacaccgtggctgatatcacatctctccttggtgtatttgcggaaa 116  Q
    ||||||||||| |||||| |||||||||| || ||||||||||||      ||||| || |||||||  |||||| |  |||| |||||||||||||| |    
T  20127836 caagcaataaactatggtaaatcggctatagctttcagctctaatacccatcatgatactgtggctgccatcacaaccttcctcggtgtatttgcggata 20127935  T
Q  117 ttggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtc 216  Q
    ||||||| |||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||  | |  || |||||||| ||||  ||    
T  20127936 ttggaagtggtaaataccttggcctcccatcaatgataggtcgaagtaaaaaggcagtattctcttacctaaaggatcaaatttggaaaaaatgtcaatc 20128035  T
Q  217 ttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattcca 316  Q
    |||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||     
T  20128036 ttggagtgctcgatctctatcccgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttactgtatgggtgctttcctctttcct 20128135  T
Q  317 acttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaac 416  Q
     |||| |||||||| ||||||||||| | |||||| || |||||||||||||| ||||||||||| || || ||||||||| ||||| | |||| |||||    
T  20128136 gcttcattatgtgaggaaatggaaagaaggatgaactctttttactggggttctaagaaaaatggcaggcgtggtattaactggatgcgatgggaaaaac 20128235  T
Q  417 tcactctacataaaagtcttggtggcctttgctt 450  Q
    ||||||||||||||||||||||||||||| ||||    
T  20128236 tcactctacataaaagtcttggtggccttggctt 20128269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 445
Target Start/End: Complemental strand, 12460512 - 12460234
Alignment:
Q  167 aaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaat 266  Q
    |||||||| ||||||||||| ||  ||||||| ||||| || ||||  || |||| |||||| || ||||| || || || || ||| |||| || ||||    
T  12460512 aaggcaattttctcttacttgaaggaccgcatatggaagaagtgtcaatcctggaatgctcgttctctatctcgagctggtaaggaaattttaattaaat 12460413  T
Q  267 ccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
    | || || || ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||    
T  12460412 cagtcgctcaggctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactgggg 12460313  T
Q  367 ttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggcctt 445  Q
    ||| || || |||||  | || ||||| ||  ||||| | ||||  ||||||||| | || ||||||||||||||||||    
T  12460312 ttcgaaaaagaatggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggcctt 12460234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 44138115 - 44138269
Alignment:
Q  155 ggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaag 254  Q
    ||||| |||||||| ||||| ||||||||  | ||  |||| || |||||||| ||||   | | ||||||||| || ||||||||||| || |||||||    
T  44138115 ggtcgtagtaagaaagcaatcttctcttatcttaaggaccgtatttggaaaaaatgtcaagcgttgagtgctcgatctctatcacgtgccggtaaagaag 44138214  T
Q  255 ttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcct 309  Q
    | ||||||||||| ||  | ||||| ||||| ||||||||||||||||| |||||    
T  44138215 tcttgatcaaatcagtttcccaagccataccttcttattgtatgggtgccttcct 44138269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 27645038 - 27644871
Alignment:
Q  215 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 314  Q
    |||||||||||||| || || || ||||| || || ||| |||||||||||||    || || ||||| |||||||||||||||||||| |||||  | |    
T  27645038 tcttggagtgctcggtcactttcccgtgctggtaaggaaattttgatcaaatctactgctcaggctattccctcttattgtatgggtgccttccttctcc 27644939  T
Q  315 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggt 382  Q
    | |||||  | ||||  ||||| || || || |||||||||||||| |||||||| || || ||||||    
T  27644938 ctacttcactttgtgcggaaattgagagaataatgaattcattttattggggttctaaaaagaatggt 27644871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 50181263 - 50181390
Alignment:
Q  242 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 341  Q
    |||||||||||  |||| ||||| || ||||| ||| | || || |||||||||||||| || ||||||||||| || ||| | ||||| || || ||||    
T  50181263 gcaggaaaagagatttttatcaagtcagtggcccaaaccattccatcttattgtatgggagccttcctcattcctacgtctctctgtgatgagattgaaa 50181362  T
Q  342 ggatgatgaattcattttactggggttc 369  Q
    | |||||||| ||||| || ||||||||    
T  50181363 gaatgatgaactcattctattggggttc 50181390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 4050034 - 4049979
Alignment:
Q  326 tgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatgg 381  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| || || ||||||||    
T  4050034 tgtgaagaaatcgaaagaatgatgaattccttttactggggctccaaaaaaaatgg 4049979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 369
Target Start/End: Original strand, 27465299 - 27465381
Alignment:
Q  287 tcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttc 369  Q
    ||||||||||||||||| |||||||| || || || |||| ||||||||| ||  |||||||| |||| ||||| | ||||||    
T  27465299 tcttattgtatgggtgccttcctcatccctacctccttatatgaagaaattgagtggatgatgtattccttttattagggttc 27465381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 366
Target Start/End: Complemental strand, 12352514 - 12352267
Alignment:
Q  119 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 218  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  12352514 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 12352415  T
Q  219 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 318  Q
    |||| ||||| || || ||| | ||||| |||||| ||||||| || || ||||| ||||| || |||||||| |||||||| || || || || || ||    
T  12352414 ggagcgctcgatctctctcaagggcagggaaagaaattttgattaagtcagtggcccaagccattccctcttactgtatgggagcctttcttatccctac 12352315  T
Q  319 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  12352314 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 12352267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 387
Target Start/End: Original strand, 46598183 - 46598370
Alignment:
Q  200 tggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgg 299  Q
    |||||||| || | |||||||||||  || || ||||| ||||| |  || ||||||||||| |||||||| |||||||| || || ||||| |||||||    
T  46598183 tggaaaaaatgccagtcttggagtgtccgatcactatctcgtgccgataaggaagttttgataaaatccgttgcacaagccatcccttcttactgtatgg 46598282  T
Q  300 gtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacg 387  Q
    | || || ||||| ||  | ||  | ||||||||| | ||  |||||||||||||||||||||||||||| || ||||||||| ||||    
T  46598283 gagcctttctcatccctgcatcgctttgtgaagaacttgagcggatgatgaattcattttactggggttcgaaaaaaaatggtcgacg 46598370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 366
Target Start/End: Original strand, 41146057 - 41146304
Alignment:
Q  119 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 218  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  41146057 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 41146156  T
Q  219 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 318  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  41146157 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 41146256  T
Q  319 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  41146257 atctctttgtgatgagattgaaaagatgatgaactcattttattgggg 41146304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 387
Target Start/End: Original strand, 31800882 - 31801053
Alignment:
Q  215 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 314  Q
    ||||||||||| || || ||||| ||||| || || ||||||||||| ||||  || |||||||  || || ||||| |||||||| || || ||||| |    
T  31800882 tcttggagtgcccgatcactatctcgtgccggtaaggaagttttgataaaatttgttgcacaagtcatcccttcttactgtatgggagcctttctcatcc 31800981  T
Q  315 caacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaatggtagacg 387  Q
    |  | ||  | ||||||||| | ||  |||||||||||||||||||||||||||| || ||||||||| ||||    
T  31800982 ccgcatcgctttgtgaagaacttgagcggatgatgaattcattttactggggttcgaa-aaaaatggtcgacg 31801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 512360 - 512412
Alignment:
Q  326 tgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaaa 378  Q
    ||||||||| | ||| ||||||||||||||||||| |||||||| || |||||    
T  512360 tgtgaagaacttgaacggatgatgaattcattttattggggttcgaaaaaaaa 512412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 372
Target Start/End: Original strand, 21950903 - 21951015
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || |||||||||||||  ||||| ||||| || || ||||||||||||||||| ||||| |  |||||||| ||||    
T  21950903 atcaaatctgttgctcaagcaattccttcttattgtatggcagcttttctcatccccacctctttatgtgaagaaatagaaagaaccatgaattcttttt 21951002  T
Q  360 actggggttcaaa 372  Q
    |||||||||||||    
T  21951003 actggggttcaaa 21951015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 444
Target Start/End: Original strand, 16861703 - 16861869
Alignment:
Q  278 gctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttcaaagaaaa 377  Q
    ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||||| || || |    
T  16861703 gctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactggggttcgaaaaaga 16861802  T
Q  378 atggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggcct 444  Q
    ||||  | || ||||| ||  ||||| | ||||  ||||||||| | || |||||||||||||||||    
T  16861803 atggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggcct 16861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 32095436 - 32095484
Alignment:
Q  125 ggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaa 173  Q
    ||||||||| |||||||||| || |||||||| ||||||||||| ||||    
T  32095436 ggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaa 32095484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 366
Target Start/End: Original strand, 23149572 - 23149819
Alignment:
Q  119 ggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtctt 218  Q
    |||||||| ||||||||||| || ||||| ||| ||||||| || ||||||||||| ||| | ||  ||||| | || || ||||| || ||||  ||||    
T  23149572 ggaagcggaaaatatctaggtcttccatctatggtaggtcgtagcaagaaggcaatcttcacctatctaaaagatcgaatatggaagaattgtcaatctt 23149671  T
Q  219 ggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaac 318  Q
    |||| ||||| || || ||| | ||||| || ||| |||||||||| || ||||| ||||| || || ||||| |||||||| || || || || || ||    
T  23149672 ggagcgctcggtctctctcaagggcagggaaggaaattttgatcaagtcagtggcccaagccattccgtcttactgtatgggagcctttcttatccctac 23149771  T
Q  319 ttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
     ||| | ||||| || || |||| ||||||||| |||||||| |||||    
T  23149772 atctctttgtgatgagatcgaaaagatgatgaactcattttattgggg 23149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 29291350 - 29291459
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  29291350 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 29291449  T
Q  360 actggggttc 369  Q
    | ||||||||    
T  29291450 attggggttc 29291459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 7273424 - 7273515
Alignment:
Q  218 tggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcct 309  Q
    ||||||||||| || || |||||||| || || ||| | ||||| ||||| || || ||||| ||||| ||||||||||||||||| |||||    
T  7273424 tggagtgctcgatctctttcacgtgctggtaaggaaatcttgattaaatcagttgcccaagccataccttcttattgtatgggtgccttcct 7273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 441
Target Start/End: Complemental strand, 42578412 - 42578219
Alignment:
Q  248 aaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatga 347  Q
    ||||||||| | || ||||| || || |||| ||| || ||||| || ||||| || ||||||||||| | ||| |||||||| ||| | ||||| || |    
T  42578412 aaagaagttctaattaaatcggttgctcaagttatcccttcttactgcatgggggcattcctcattcctagttcattatgtgaggaactagaaagaatca 42578313  T
Q  348 tgaattcattttactggggttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtgg 441  Q
    |||||||||||||  |||| || || ||||| ||| | ||||| || ||  |||||   ||||  || |||||||| |||||||||| ||||||    
T  42578312 tgaattcattttatcggggatccaaaaaaaacggtcgtcgcggcatcaattggatgaaatgggacaagctcactcttcataaaagtcgtggtgg 42578219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 445
Target Start/End: Complemental strand, 1404 - 1126
Alignment:
Q  167 aaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaat 266  Q
    |||||||| ||||||||||| ||  | ||||| ||||| || ||||  || || | |||||| || ||||| || || || || ||| |||| || ||||    
T  1404 aaggcaattttctcttacttgaaggatcgcatatggaagaagtgtcaatcctgtaatgctcgttctctatctcgagctggtaaggaaattttaattaaat 1305  T
Q  267 ccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactgggg 366  Q
    | || || || ||||| || |||||||||||||| || || || |||||   |||||| ||||| ||| | |||||||||||||| || |||||||||||    
T  1304 cagtcgctcaggctattccatcttattgtatgggggcctttcttattcctggttctttgtgtgaggaattagaaaggatgatgaactctttttactgggg 1205  T
Q  367 ttcaaagaaaaatggtagacgcggtattaacgggatgtggtggggaaaactcactctacataaaagtcttggtggcctt 445  Q
    ||| || || |||||  | || ||||| ||  ||||| | ||||  ||||||||| | || ||||||||||||||||||    
T  1204 ttcgaaaaagaatggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtggcctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 35612049 - 35612158
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  35612049 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 35612148  T
Q  360 actggggttc 369  Q
    | ||||||||    
T  35612149 attggggttc 35612158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 351
Target Start/End: Original strand, 11625761 - 11625997
Alignment:
Q  116 attggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctgg-aaaaactgtcgg 214  Q
    |||||||| || || ||||| ||||| ||||||||| | ||||| || |||||||| || ||||||||||||||| | |  || ||| ||||| ||||      
T  11625761 attggaagtggcaagtatctgggcctaccatcaatggtgggtcgtagcaagaaggctattttctcttacttaaaagatcttatttggaaaaaaatgtcaa 11625860  T
Q  215 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 314  Q
     ||||||| ||| | ||||| ||||| ||||| || ||| | || |||||||| ||||| ||||| || || |||||||| ||||| || || |||||||    
T  11625861 gcttggagcgctagatccctctcacgggcagggaaggaaatattaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattc 11625960  T
Q  315 caacttctttatgtgaagaaatggaaaggatgatgaa 351  Q
    | || ||  | || ||||| || ||||||||||||||    
T  11625961 ctacctccctttgcgaagagatagaaaggatgatgaa 11625997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 315
Target Start/End: Complemental strand, 9182512 - 9182312
Alignment:
Q  116 attggaagcggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctgg-aaaaactgtcgg 214  Q
    |||||||| || || ||||| ||||| ||||||||| | ||||| || |||||||| || ||||||||||||||| | |  || ||| ||||| ||||      
T  9182512 attggaagtggcaagtatctgggcctaccatcaatggtgggtcgtagcaagaaggctattttctcttacttaaaagatcttatttggaaaaaaatgtcaa 9182413  T
Q  215 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 314  Q
     ||||||| ||| | ||||| ||||| ||||| || ||| | || |||||||| ||||| ||||| || || |||||||| ||||| || || |||||||    
T  9182412 gcttggagcgctagatccctctcacgggcagggaaggaaatattaatcaaatcggtggcccaagccattccttcttattgcatgggggcctttctcattc 9182313  T
Q  315 c 315  Q
    |    
T  9182312 c 9182312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 42199438 - 42199359
Alignment:
Q  290 tattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcattttactggggttc 369  Q
    ||||||||||| ||||| || ||||  || ||||||||||||||||| ||||| |  |||||||| ||||||||||||||    
T  42199438 tattgtatgggagcttttcttattcacacctctttatgtgaagaaattgaaagaaccatgaattctttttactggggttc 42199359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 4018757 - 4018648
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  4018757 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 4018658  T
Q  360 actggggttc 369  Q
    | ||||||||    
T  4018657 attggggttc 4018648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 24465738 - 24465847
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |  |||||||| || |    
T  24465738 atcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcattccaacctctttatgtgaagaaattgaaagaaccatgaattctttct 24465837  T
Q  360 actggggttc 369  Q
    | ||||||||    
T  24465838 attggggttc 24465847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 8072675 - 8072564
Alignment:
Q  260 atcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatgaattcatttt 359  Q
    |||||||| || || ||||| || || |||||||||||||| ||||| ||||| || || ||||||||||||| ||| ||||| |  |||| ||| ||||    
T  8072675 atcaaatctgttgctcaagcaattccttcttattgtatgggagcttttctcatccccacctctttatgtgaag-aatagaaagaaccatgacttcttttt 8072577  T
Q  360 actggggttcaaa 372  Q
    |||||||||||||    
T  8072576 actggggttcaaa 8072564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 646968 - 647086
Alignment:
Q  251 gaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatgatga 350  Q
    ||||| ||||||||||| || |||||||| || || |||||||| ||||| || |||||||| || |  ||||| ||||| ||| | ||||||||||||     
T  646968 gaagtcttgatcaaatcggtcgcacaagccattccatcttattgcatgggggcattcctcatacctaagtctttgtgtgacgaacttgaaaggatgatgc 647067  T
Q  351 attcattttactggggttc 369  Q
    | || ||||| ||||||||    
T  647068 actctttttattggggttc 647086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 42704489 - 42704386
Alignment:
Q  125 ggtaaatatctaggcctcccatcaatgataggtcgaagtaagaaggcaatattctcttacttaaaaaaccgcatctggaaaaactgtcggtcttggagtg 224  Q
    ||||||||||| |||||||| || |||  ||| |  |||||||| || || ||||||||||| ||  | || || |||||||||||||| ||||||||||    
T  42704489 ggtaaatatctcggcctcccctctatggcaggacacagtaagaaagccatcttctcttacttgaaggatcgtatttggaaaaactgtcgctcttggagtg 42704390  T
Q  225 ctcg 228  Q
    ||||    
T  42704389 ctcg 42704386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 19932460 - 19932506
Alignment:
Q  399 ggatgtggtggggaaaactcactctacataaaagtcttggtggcctt 445  Q
    ||||||||||||  ||||||||| |||| ||||||||||||||||||    
T  19932460 ggatgtggtgggacaaactcactttacacaaaagtcttggtggcctt 19932506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 380
Target Start/End: Original strand, 6864147 - 6864279
Alignment:
Q  248 aaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaaggatga 347  Q
    |||||| | ||||||||||| || |  |||||||| ||||| ||||||||||| | ||| ||| | || || || ||||| ||||| || ||||||||||    
T  6864147 aaagaaatcttgatcaaatcagttgtccaagctattccctcctattgtatgggggattttctcctccccacctccttatgcgaagagattgaaaggatga 6864246  T
Q  348 tgaattcattttactggggttcaaagaaaaatg 380  Q
    ||||||| || ||| || ||||||| |||||||    
T  6864247 tgaattctttctaccggtgttcaaaaaaaaatg 6864279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 354
Target Start/End: Complemental strand, 51141821 - 51141682
Alignment:
Q  215 tcttggagtgctcgctccctatcacgtgcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattc 314  Q
    |||||||| |||||  ||||||| || || || |||||||||||||| ||||| || || ||||| || ||  ||||||||||| | |  || |||||||    
T  51141821 tcttggagcgctcgtcccctatctcgagccgggaaagaagttttgattaaatcagttgcccaagccattccaacttattgtatgagggactttctcattc 51141722  T
Q  315 caacttctttatgtgaagaaatggaaaggatgatgaattc 354  Q
    | | |||||||||||| ||| | |||||||| ||||||||    
T  51141721 ctagttctttatgtgaggaattagaaaggataatgaattc 51141682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 238345 - 238236
Alignment:
Q  242 gcaggaaaagaagttttgatcaaatccgtggcacaagctataccctcttattgtatgggtgctttcctcattccaacttctttatgtgaagaaatggaaa 341  Q
    ||||| ||||||||| | || |||||  | ||||| ||||| ||||||||||||||||| || ||  | ||||| |||||  | ||||||||||| || |    
T  238345 gcaggtaaagaagttcttattaaatctattgcacatgctatcccctcttattgtatgggggcatttttgattcctacttccctttgtgaagaaatcgaga 238246  T
Q  342 ggatgatgaa 351  Q
    ||||||||||    
T  238245 ggatgatgaa 238236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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