View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13645_low_3 (Length: 354)
Name: NF13645_low_3
Description: NF13645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13645_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 143 - 335
Target Start/End: Original strand, 11496094 - 11496286
Alignment:
| Q |
143 |
caattggaaatgtcagtgcaatagtcactctgatcttaaatataagcaaaaatttacaaatctctctctcttgttctaaaggaagaaatgagagaaaccc |
242 |
Q |
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| T |
11496094 |
caatttgaaatgtcagtgcaatagtcactctgatcttaaatataagcaaaaatttacaaatctctctctcttgttctaaaggaagaaatgagagaaaccc |
11496193 |
T |
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| Q |
243 |
agaaatcaaatgacagattaaagaaaagggtcatgagaaaaagtgaaaaagatgctacctttaccttttgaaagcaatgaaatgggtggtaac |
335 |
Q |
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| T |
11496194 |
ataaatcaaatgacagattaaagaaaagggtcatgagaaaaagtgaaaaagatgctacctttaccttttgaaagcaatgaaatgggtggtaac |
11496286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 11495988 - 11496056
Alignment:
| Q |
15 |
catcaaacacaacactaacttgtaaacaccgataataatttaagaaaatagaagtgaacaaatgtaact |
83 |
Q |
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| T |
11495988 |
catcaaacacaacactaacttgtaaacaccggtaataatttaagaaaatagaagtgagcaaatgtaact |
11496056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 10338595 - 10338641
Alignment:
| Q |
25 |
aacactaacttgtaaacaccgataataatttaagaaaatagaagtga |
71 |
Q |
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| T |
10338595 |
aacactagcgtgtaaacattgataataatttaagaaaatagaagtga |
10338641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 29587677 - 29587723
Alignment:
| Q |
36 |
gtaaacaccgataataatttaagaaaatagaagtgaacaaatgtaac |
82 |
Q |
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| T |
29587677 |
gtaaacaccggtaataatttaagaaaatggaagtgattaaatgtaac |
29587723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 31652450 - 31652480
Alignment:
| Q |
41 |
caccgataataatttaagaaaatagaagtga |
71 |
Q |
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| T |
31652450 |
caccgataataatttaagaaaatagaagtga |
31652480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 33423330 - 33423358
Alignment:
| Q |
167 |
tcactctgatcttaaatataagcaaaaat |
195 |
Q |
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| T |
33423330 |
tcactctgatcttaaatataagcaaaaat |
33423358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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