View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13645_low_4 (Length: 348)
Name: NF13645_low_4
Description: NF13645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13645_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 43893824 - 43893690
Alignment:
| Q |
18 |
catgagagtatgagttgttcataattttgatttgatgtactgaatatttgaattaaaggg--tggatggtgaggagtattctagtttttgccttaatttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43893824 |
catgagagtatgagttgttcataattttgatttgatgtactgaatatttgaattaaagggggtggatggtgaggagtattctagtttttaccttaatttc |
43893725 |
T |
|
| Q |
116 |
tatgtatgtgagatttccttgttgcaggatgatga |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43893724 |
tatgtatgtgagatttccttgttgcaggatgatga |
43893690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 44303216 - 44303042
Alignment:
| Q |
144 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctaccattg---------------gatcaaatgaaggag |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
44303216 |
atgatgagctattttggtgttttggtactaatgggttggaactttttaattgcttattctcctacctttgaaaaagtgcaataaggatcaatagaaggac |
44303117 |
T |
|
| Q |
229 |
ctaaggaacatatatcctaattaattgctactggtttgttgcagatgtatgtatctcttctagttacttattata |
303 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44303116 |
ctaaggaacacatatcctaattagttgctactggtttgttgcagatgtgtgtatctcttctagttacttattata |
44303042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 44303453 - 44303347
Alignment:
| Q |
51 |
gatgtactgaatatttgaattaaaggg--tggatggtgaggagtattctagtttttgccttaatttctatgtatgtgagatttccttgttgcaggatgat |
148 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44303453 |
gatgtagtgaatatttgaattaaagggggtggattgtgaggagtattctagtttttgccttaatttctatgta--tgagatttccttgttgcaggatgat |
44303356 |
T |
|
| Q |
149 |
gagttattt |
157 |
Q |
| |
|
||| ||||| |
|
|
| T |
44303355 |
gagctattt |
44303347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 44294620 - 44294505
Alignment:
| Q |
18 |
catgagagtatgagttgttcataattttgatttgatgtactgaatatttgaattaa--agggtggatggtgaggagtattctagtttttgccttaatttc |
115 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| || || |||||||| |||||||||||||||| | |||||||| |
|
|
| T |
44294620 |
catgagagtgtgagatgttcataatttagatttgatgtactgaatatttgaattaaggagagtagatggtgaagagtattctagtttttacattaatttc |
44294521 |
T |
|
| Q |
116 |
tatgtatgtgagattt |
131 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44294520 |
tatgtatgtgagattt |
44294505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 43893552 - 43893382
Alignment:
| Q |
144 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctaccattg---------------gatcaaatgaaggag |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
43893552 |
atgatgagctattttggtgttttggtactaatgggttggaactttttaattgcttattctcctacctttgaaaaagtgcaataaggatcaaaagaaggac |
43893453 |
T |
|
| Q |
229 |
ctaaggaacatatatcctaattaattgctactggtttgttgcagatgtatgtatctcttctagttacttattata |
303 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43893452 |
ctaaggaacacatatcctaattagtggctactggtttgttgcagat----gtatctcttctagttacttattata |
43893382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 44304262 - 44304225
Alignment:
| Q |
18 |
catgagagtatgagttgttcataattttgatttgatgt |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44304262 |
catgagagtatgagttgttcataattttgatttgatgt |
44304225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 44294379 - 44294316
Alignment:
| Q |
144 |
atgatgagttattttggtgttttggtactaacaggttggaactttttaattgcttattctcctac |
208 |
Q |
| |
|
||||| || ||||||||||||| |||||||| |||| | | ||||||||||||||||||| |||| |
|
|
| T |
44294379 |
atgataagctattttggtgttt-ggtactaataggtcgtagctttttaattgcttattctactac |
44294316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University