View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13646_high_1 (Length: 1440)
Name: NF13646_high_1
Description: NF13646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13646_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 844 - 1439
Target Start/End: Original strand, 27125200 - 27125790
Alignment:
| Q |
844 |
aaaatattaggttgaaaataagaggtagaatgtgccaattgtatatgaatcggctgaacctattcaggtcctaccgattcaatactcgattggtattgat |
943 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
27125200 |
aaaatattaggttgaaaataggaggtagaatgtgccaattgtatatgaatcagctgaacctattgaggtc--accgattcaatactcgattggtcttgat |
27125297 |
T |
|
| Q |
944 |
taacaatatctacctaatttgtggttccttgcacaccttgttggtgaccgaattgtcaccaaaatcagttgaagctttgtgatcctacacagttacaact |
1043 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27125298 |
taacaatgtctacataatttgtggttccttgtacaccttgttggtgaatgaattgtcaccaaaatcagttgaagctt-gtgatactacacagttacaact |
27125396 |
T |
|
| Q |
1044 |
atggtggtcctacacagtttgaggtttattattctgagagctttattatctatggcggtcctacacagtttgaggaattggtctctgtacttacgcacaa |
1143 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| |||| || |||| |
|
|
| T |
27125397 |
atggtggtcctacacagtttgatgtttattattctgaaagctttattatctatggtgatcctacacagtttgaggaattagtctctgcacttgcgtacaa |
27125496 |
T |
|
| Q |
1144 |
agataaaccggtttaaactataaataaataaatcaatggtaggagtttaattatttgatcctaatatcccaaaatgagaaggcttcattcacatttgaca |
1243 |
Q |
| |
|
|||| ||||||||||||| | ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27125497 |
agattaaccggtttaaacaaaaaata--taaagcaatggtaggaatttaattatttgatcctaatatcccaaaatgagaagacttcattcacatttgaca |
27125594 |
T |
|
| Q |
1244 |
gcattcaatttgcataaaagcgtctcatacccaatacattgctcaaactgtattggtagattattttcaaagttttccgaatgaaaaccactatacttaa |
1343 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27125595 |
gcattcaatttgaataaaattaactcataccaaatacattgctcaaactttattgggagattattttcaaagttttccgaatgaaaaccactatacttaa |
27125694 |
T |
|
| Q |
1344 |
cggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgctatgtctatgcttattttaagaggatttagagaaaatgaacc |
1439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27125695 |
cggaaagcattacaaaccaaaaactgttatgcagatcatagaccatcattttgcaatgtctatgcttattttaaggggatttagagaaaatgaacc |
27125790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 356 - 845
Target Start/End: Original strand, 27124632 - 27125140
Alignment:
| Q |
356 |
agcataagaaaccgctggttgaactatttagagacgatgaagagaatgaattt-catagtcattcatatgtataaggaaggggactcatgtgttgatggt |
454 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||| ||||| || ||||| ||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
27124632 |
agcataagaaaccattggttgaactgtttagagacgatgaagagaatcaattttcagagtcactcatacatatagggaaggggactcatgcgttgatggt |
27124731 |
T |
|
| Q |
455 |
ttggaaaacattggcttaactttatctaattctatctggtggcatgaagcaccagaccctattagaagtgagctagctagaaacgtgttgggtat----- |
549 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
27124732 |
ttggcaaacattggcttaactttatctaattttatctggtcgcatgaagcaccataccctattattattgagctagctagaaacgtgttgggtatgtcca |
27124831 |
T |
|
| Q |
550 |
-----agatttgtaaccttttgaaaggcttgaaacaagtactagtatcgtttcttcttcatcaggtcctggtagatgtgttacagggttattcggtccag |
644 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27124832 |
actatagatttgtaaccttttaaaaggcttgaaacaagtactagtatcgtttcttcttcatcaggtcctggtagatgtgttacagggttattcggtccag |
27124931 |
T |
|
| Q |
645 |
gaggaaaacttatccgtggcttttggattgggtaatccataatcgagggttgagttccttctactgggctgcaggcgtattctctagcgcaagacatgta |
744 |
Q |
| |
|
| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
27124932 |
gtggaaaacttatccgtggcttctgcattgggtaatccagaatcgagggttgagttcctgctactgggctgcatgcatattctctagcgcatgacatgtg |
27125031 |
T |
|
| Q |
745 |
gctcgcctgcatagtactgccataaggtagaacttgcagc--------aagtcaatatgtcttacaccttcaggtggcctcctcaccatatgtatgtgtc |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27125032 |
gctcgcctgcatagtactgccataaggtagaacttgccgcatgccaatatggcaatatgtcttacaccttcaggtggcctcctcaccatatgtatctgtc |
27125131 |
T |
|
| Q |
837 |
taggttgaa |
845 |
Q |
| |
|
||| ||||| |
|
|
| T |
27125132 |
tagattgaa |
27125140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 730 - 781
Target Start/End: Complemental strand, 9430674 - 9430623
Alignment:
| Q |
730 |
agcgcaagacatgtagctcgcctgcatagtactgccataaggtagaacttgc |
781 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
9430674 |
agcgtaagacatgttgctcgcttgcatagtacttccataaggtggaacttgc |
9430623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University