View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13646_high_6 (Length: 326)
Name: NF13646_high_6
Description: NF13646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13646_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 14774414 - 14774721
Alignment:
| Q |
19 |
tgtgtgtcaataagacaacagaggaaaagggatcaagatttacttgcacagaagccaacctctatagtagccaaaacacttgcacagaagccaacctcta |
118 |
Q |
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| T |
14774414 |
tgtgcgtcaataagacaacagaggaaaagggatcaagatttacttgcacagaagccaacctctatagtagccaaaacacttgcacagaagccaaactcta |
14774513 |
T |
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| Q |
119 |
tagtagccagcacacttgcccagaagccaacctctatagtagccaacgctacatctcgagtagaaggagcctcagtttcagaaaccccggcaagtggaac |
218 |
Q |
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| T |
14774514 |
tagtagccagcacacttgcccagaagccaacctctatagtagccaacgctacatctcgagtagaaggagcctcagtttcagaaaccccggcaagtggaac |
14774613 |
T |
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| Q |
219 |
aagttctcacaaggtcgagagtgttgataaatctggcagtgtacaacaagtcaggtctacttcacttccttcaagtaaatcaaactccgtagcatatgct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14774614 |
aagttctcacaaggtcgagagtgttgataaatctggcagtgtacaacaagtcaggtctacttcacttccttcaagtaaatcaaactccgtagcatatgct |
14774713 |
T |
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| Q |
319 |
tgtgtggc |
326 |
Q |
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|||||||| |
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| T |
14774714 |
tgtgtggc |
14774721 |
T |
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