View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13647_low_1 (Length: 385)
Name: NF13647_low_1
Description: NF13647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13647_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 40935145 - 40935522
Alignment:
| Q |
1 |
gcatctaagcctttgtttttctatgcgacacaagccatctctatctattactgctgttaatctctgttaagataacacgaataaacctctcctttctaca |
100 |
Q |
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| T |
40935145 |
gcatctaagcctttgtttttctatgcgacacaagccatctctatctattactgctgttaatctctgttaagataacacgaataaacctctcctttctaca |
40935244 |
T |
|
| Q |
101 |
tgagtgaactttctcccaaattgacaaaagtgaattataagataaaagttttttccgagtnnnnnnnnntgacgataaggcgtctttcttagaaggtgga |
200 |
Q |
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| T |
40935245 |
tgagtgaactttctcccaaattgacaaaagtgaattataagataaaagttttttccgagtaaaaaaaaatgacgataaggcgtctttcttagaaggtgga |
40935344 |
T |
|
| Q |
201 |
aacaagaaagttaactgcaaaacagttaactttagagtaaattggcaaaacagttatccatgcaccaactttttggaagttaatttacaatattaacctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |
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| T |
40935345 |
aacaagaaagttaactgcaaaacagttaactttagagtaaataggcaaaacagttatccatgcaccaactttttggaagtgaagttacaatattaaccac |
40935444 |
T |
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| Q |
301 |
tttatcacctaagccatagtctctagcatatctcgcaatttccatatgtggtcgcatgggtctcagctaatattcttc |
378 |
Q |
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| T |
40935445 |
tttatcagctaagccatagtctctagcatatctagcaatttccatatgtggtcgcatgggtctcagctaattttcttc |
40935522 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 48137957 - 48137902
Alignment:
| Q |
309 |
ctaagccatagtctctagcatatctcgcaatttccatatgtggtcgcatgggtctc |
364 |
Q |
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|||||||||| || || | |||||| |||||||||| ||||||||||||||||||| |
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| T |
48137957 |
ctaagccataatcactcgtatatctagcaatttccacatgtggtcgcatgggtctc |
48137902 |
T |
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