View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13647_low_3 (Length: 272)

Name: NF13647_low_3
Description: NF13647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13647_low_3
NF13647_low_3
[»] chr1 (5 HSPs)
chr1 (149-271)||(26209792-26209914)
chr1 (149-265)||(16136607-16136723)
chr1 (149-222)||(14244659-14244733)
chr1 (13-79)||(32001440-32001506)
chr1 (40-86)||(34715020-34715066)
[»] chr7 (8 HSPs)
chr7 (149-263)||(22616330-22616444)
chr7 (149-264)||(41970609-41970723)
chr7 (2-91)||(31846558-31846647)
chr7 (149-236)||(38364183-38364269)
chr7 (3-86)||(46401222-46401305)
chr7 (2-91)||(17189389-17189478)
chr7 (18-86)||(32027371-32027439)
chr7 (22-83)||(27859635-27859696)
[»] chr2 (4 HSPs)
chr2 (149-264)||(29483306-29483420)
chr2 (1-86)||(43178375-43178460)
chr2 (2-86)||(17562804-17562888)
chr2 (12-50)||(24133955-24133993)
[»] chr8 (4 HSPs)
chr8 (1-86)||(4884248-4884333)
chr8 (2-85)||(40616912-40616995)
chr8 (12-86)||(15255674-15255748)
chr8 (12-49)||(9540833-9540870)
[»] chr4 (12 HSPs)
chr4 (1-86)||(49705163-49705248)
chr4 (1-86)||(23391942-23392027)
chr4 (2-86)||(45621710-45621794)
chr4 (4-85)||(15666909-15666990)
chr4 (18-86)||(9764383-9764451)
chr4 (12-86)||(27512124-27512198)
chr4 (22-86)||(16041322-16041386)
chr4 (25-85)||(22771909-22771969)
chr4 (22-86)||(48997123-48997187)
chr4 (39-86)||(40140450-40140497)
chr4 (12-50)||(35259139-35259177)
chr4 (18-46)||(34442051-34442079)
[»] chr3 (14 HSPs)
chr3 (2-86)||(50327319-50327403)
chr3 (2-92)||(20252550-20252640)
chr3 (2-83)||(13843501-13843582)
chr3 (2-81)||(44415058-44415137)
chr3 (1-86)||(40291676-40291756)
chr3 (2-96)||(33638201-33638295)
chr3 (2-86)||(4156722-4156806)
chr3 (4-86)||(50874614-50874695)
chr3 (149-236)||(3267092-3267179)
chr3 (15-86)||(13859792-13859863)
chr3 (22-86)||(4317532-4317596)
chr3 (22-85)||(34121630-34121693)
chr3 (13-86)||(32862015-32862088)
chr3 (12-50)||(37486397-37486435)
[»] chr6 (3 HSPs)
chr6 (2-85)||(29396706-29396789)
chr6 (12-54)||(1800215-1800257)
chr6 (12-86)||(8635275-8635349)
[»] chr5 (4 HSPs)
chr5 (1-85)||(8466534-8466618)
chr5 (2-86)||(31506762-31506851)
chr5 (12-86)||(42545092-42545166)
chr5 (100-147)||(5818881-5818928)
[»] scaffold0196 (1 HSPs)
scaffold0196 (12-53)||(7971-8012)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 26209914 - 26209792
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcatactcccatct 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26209914 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcctactcccatct 26209815  T
Q  249 tccctgcattctctctgctcctc 271  Q
    ||||||||||||||||| |||||    
T  26209814 tccctgcattctctctgttcctc 26209792  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 16136723 - 16136607
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcatactcccatct 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  16136723 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcctacttccatct 16136624  T
Q  249 tccctgcattctctctg 265  Q
    |||||||||||||||||    
T  16136623 tccctgcattctctctg 16136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 14244659 - 14244733
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagca-ggggcagttttgtcaaatccccaca 222  Q
    ||||||||||| |||||||||  |||||||| |||||  |||| ||||| |||||||||||||||||||| ||||    
T  14244659 gacacaaatacaacaccatggacagtttggacatttcatccataaagcatggggcagttttgtcaaatcctcaca 14244733  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 32001440 - 32001506
Alignment:
Q  13 aatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttt 79  Q
    |||| ||||||||||||| |||| |||| |||||||||| || |||| | | |||||||||||||||    
T  32001440 aatggttcagttaattttaatatagttcagttcggttaagcggttcggaatagtttttggttatttt 32001506  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 34715066 - 34715020
Alignment:
Q  40 cggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||| |  |||||||| ||||||||||||||||||||||    
T  34715066 cggttcggttaatcagttcgaattagtttttggttatttttgcccac 34715020  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 22616330 - 22616444
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcatactcccatct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  22616330 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatccccatagacccatcttcttcatactcccatct 22616429  T
Q  249 tccctgcattctctc 263  Q
    |||||||||||||||    
T  22616430 tccctgcattctctc 22616444  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 41970723 - 41970609
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcatactcccatct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||  | ||||||||    
T  41970723 gacacaaatacgacaccatgggtagtttggatatttccaccattaagtaggggtagttttgtcaaat-cccatagacccatcttcttcccaatcccatct 41970625  T
Q  249 tccctgcattctctct 264  Q
    || |||||||||||||    
T  41970624 tctctgcattctctct 41970609  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 31846558 - 31846647
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccacgctta 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  31846558 agaattggttaaatggttcagttaattttgatatggttcggttcggttaaccagttcgaattggtttttggttatttttgcccaccctta 31846647  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 38364183 - 38364269
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  38364183 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaat-cccatagacccatcttcttc 38364269  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 46401222 - 46401305
Alignment:
Q  3 gaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  46401222 gaattggttaaatggttcagttaattttgatatggttcggttcggttaaccggtttaaattgggttttggttatttttgcccac 46401305  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 17189389 - 17189478
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccacgctta 91  Q
    ||||||||| ||||| |||| ||||||| ||||  |||||||| ||||||||| || || ||||||||||||||||||||||||| ||||    
T  17189389 agaattggtaaaatggttcaattaatttagataccgttcggtttggttaaccggttagatttggtttttggttatttttgcccaccctta 17189478  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 32027439 - 32027371
Alignment:
Q  18 ttcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||||||||||||||||| ||||| | ||||  | |||| ||||||| ||||||||||    
T  32027439 ttcagttaattttgatatggttcggttcgattaacaggttcggttcggttattggttaattttgcccac 32027371  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 27859635 - 27859696
Alignment:
Q  22 gttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcc 83  Q
    |||||||||  ||||| |||||||||||||||| |||   |||||||||||||| |||||||    
T  27859635 gttaattttagtatggatcggttcggttaaccggttcattttggtttttggttaattttgcc 27859696  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 29483306 - 29483420
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttcatactcccatct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||  | || |||||    
T  29483306 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaat-cccatagacccatcttcttcccaatcacatct 29483404  T
Q  249 tccctgcattctctct 264  Q
    || || ||||||||||    
T  29483405 tctctacattctctct 29483420  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43178375 - 43178460
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43178375 aagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggtttttggttatttttgcccac 43178460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 17562888 - 17562804
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||| |||||    
T  17562888 agaattggttaaatggttcagttaattttgatacggttcggttcgattaacctgttcgaattggtttttggttattttttcccac 17562804  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 24133955 - 24133993
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggtta 50  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24133955 aaatggttcagttaattttgatatggttcggttcggtta 24133993  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4884333 - 4884248
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4884333 aagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggtttttggttatttttgcccac 4884248  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 40616912 - 40616995
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| ||||||||||||||||||||    
T  40616912 agaattggttaaatgattcagttaattttgatatggttcggttcggttaataggttcaaattgatttttggttatttttgccca 40616995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 15255674 - 15255748
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||| |||||||||||||||||| |||||||||| ||||| ||||||| | |||| ||||||| ||||||||||    
T  15255674 aaatggttcagttaattttgatatagttcggttcgattaactgattcgattcggttattggttaattttgcccac 15255748  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9540833 - 9540870
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggtt 49  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  9540833 aaatggttcagttaattttgatatggttcgattcggtt 9540870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49705248 - 49705163
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49705248 aagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggtttttggttatttttgcccac 49705163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23392027 - 23391942
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  23392027 aagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattgatttttggttatttttgcccac 23391942  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 45621710 - 45621794
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  45621710 agaattggttaaatggttcggttaattttgatatggttcggtttggttaaccggtttgaattggtttttggttatttttgtccac 45621794  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 15666990 - 15666909
Alignment:
Q  4 aattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    ||||||||||||  |||| |||||||||||| ||||| ||||| ||||||| ||| | ||||||||||||||||||||||||    
T  15666990 aattggttaaatagttcaattaattttgatacggttcagttcgattaaccggttcaatttggtttttggttatttttgccca 15666909  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9764451 - 9764383
Alignment:
Q  18 ttcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||||| ||||| ||||| ||||| | ||||||||||||||||||||||||| |||||    
T  9764451 ttcagttaattttgatacggttcagttcgtttaactggttcgaattggtttttggttatttttacccac 9764383  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 27512124 - 27512198
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||| |||| ||||||||||||| |||| ||||||||||||| ||| |  |||||||||||||||||| |||||    
T  27512124 aaatggttcaattaattttgatatagttcagttcggttaaccggttcaatatggtttttggttattttttcccac 27512198  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 16041386 - 16041322
Alignment:
Q  22 gttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||| |||||| ||||||||||| |||| |||| ||||||||||| ||| ||||||||||    
T  16041386 gttaattttaatatggatcggttcggttgaccggttcggattggtttttgattaattttgcccac 16041322  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 22771969 - 22771909
Alignment:
Q  25 aattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    |||||| ||||||||| ||||||||||||  |||| || ||||||||||||||||||||||    
T  22771969 aattttaatatggttcagttcggttaaccagttcggatcggtttttggttatttttgccca 22771909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 48997123 - 48997187
Alignment:
Q  22 gttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||| || |||||| ||||||||||||||||||| ||  ||||||| |||||||||||||    
T  48997123 gttaattttaatttggttcagttcggttaaccgattcgatttaatttttggatatttttgcccac 48997187  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 40140497 - 40140450
Alignment:
Q  39 tcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  40140497 tcggttcggttaaccggttcggattggtttttggttaattttgcccac 40140450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 35259139 - 35259177
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggtta 50  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  35259139 aaatggttcagttaattttgatatggttcggttcggtta 35259177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 34442051 - 34442079
Alignment:
Q  18 ttcagttaattttgatatggttcggttcg 46  Q
    |||||||||||||||||||||||||||||    
T  34442051 ttcagttaattttgatatggttcggttcg 34442079  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 50327403 - 50327319
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50327403 agaattggttaaatggttcaattaattttgatacggttcggttcggttaaccggttcgaattggtttttggttatttttgcccac 50327319  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 20252640 - 20252550
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccacgcttac 92  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||||    
T  20252640 agaattggttaaattgttcagttaattttgatatggttcggttcggttaaccggttcaaattgggttttagttatttttgcccacccttac 20252550  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 13843501 - 13843582
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcc 83  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||    
T  13843501 agaaatggttaaatggttcagttaattttgatatggttcagttcggttaaccggttcaaattgggttttggttatttttgcc 13843582  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 44415137 - 44415058
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttg 81  Q
    ||||||||||||||  ||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||    
T  44415137 agaattggttaaatagttcagttaattttgatacggtgcgattcgattaaccgattcgaattggtttttggttatttttg 44415058  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40291756 - 40291676
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||||||||| ||||||||||| |||||     ||||||||||||||| |||||||||||||||||||||||||||||||    
T  40291756 aagaattggttaaatggttcagttaattctgata-----cggttcggttaaccggttcgaattggtttttggttatttttgcccac 40291676  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 33638295 - 33638201
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccacgcttacttct 96  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||| |||||||| ||| |||||  |||||||||||||| ||||| | |||||||    
T  33638295 agaattggttaaatggttcagtttattgtgatatggttcggttcagttaaccggttcaaattgaattttggttatttttacccacccctacttct 33638201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 4156722 - 4156806
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||| |||||||||||||||||| |||||||  |||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  4156722 agaattagttaaatgattcagttaactttgatacagttcggttcggttaactggttcaaattgaattttggttatttttgcccac 4156806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 50874695 - 50874614
Alignment:
Q  4 aattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||  |||||||||||||    
T  50874695 aatttgttaaatggttcagttaattttgatacggttcggtttggttaaccgatt-aaattggtttttgcgtatttttgcccac 50874614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 3267092 - 3267179
Alignment:
Q  149 gacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatccccacagacccatcttcttc 236  Q
    ||||||||||| ||||||||| |||||| || ||||| ||||| ||  ||||||| |||||||||||| | ||| |||||||||||||    
T  3267092 gacacaaatacaacaccatggatagtttagacatttcaaccataaattaggggcaattttgtcaaatcacaacaaacccatcttcttc 3267179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 13859792 - 13859863
Alignment:
Q  15 tgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||| ||||||||| |||||||||||||| |||||||| |||  |||||||||||||||  |||||||||    
T  13859792 tgattcggttaattttaatatggttcggttcagttaaccggttcagattggtttttggttaactttgcccac 13859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 4317532 - 4317596
Alignment:
Q  22 gttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    |||||||||  ||||| |||||||||||||||| |||| ||||||| ||||||| ||||||||||    
T  4317532 gttaattttagtatggatcggttcggttaaccggttcggattggttattggttaattttgcccac 4317596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 34121693 - 34121630
Alignment:
Q  22 gttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    ||||||||| ||||||||| |||||||||| ||||||  | |||||||| ||||||||||||||    
T  34121693 gttaattttaatatggttcagttcggttaatcgattcagaatggtttttagttatttttgccca 34121630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 32862088 - 32862015
Alignment:
Q  13 aatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||||||  | |||||| |||||| |||||| || || |  ||||||||||||||||||||||    
T  32862088 aatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccac 32862015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 37486397 - 37486435
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggtta 50  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  37486397 aaatggttcagttaattttgatatggttcggttcagtta 37486435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 29396789 - 29396706
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| | || |||||||||||||||||||||    
T  29396789 agaattggttaaatgtttcagttaattttgatacggttcggttcggttaaccggttcaattttgtttttggttatttttgccca 29396706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 1800257 - 1800215
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaaccg 54  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  1800257 aaatggttcagttaattttgatatggttcgattcagttaaccg 1800215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8635349 - 8635275
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||| || ||||||||||||||||||||| || ||||||||| ||||  | |||| ||||||| |||| |||||    
T  8635349 aaatggtttagttaattttgatatggttcgatttggttaaccggttcggttcggttattggttaatttttcccac 8635275  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8466534 - 8466618
Alignment:
Q  1 aagaattggttaaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgccca 85  Q
    |||||||||||||||| | |||||||||||||||  |||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  8466534 aagaattggttaaatggtccagttaattttgatacagttcggttcgattaaccgattcgaattggtttatggatatttttgccca 8466618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 31506851 - 31506762
Alignment:
Q  2 agaattggttaaatgattcagttaattttgatatggttcggttc-----ggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||     ||||||||| ||| |||||||||||||||||||||||||||    
T  31506851 agaattggttaaatggttcagttaattttgatacggttcggttcggttcggttaaccggttcaaattggtttttggttatttttgcccac 31506762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42545166 - 42545092
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaaccgattcgaattggtttttggttatttttgcccac 86  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||  |||||| ||||||| ||||||||||    
T  42545166 aaatggttcagttaattttgatatggttcggttaggttaaacgattcggtttggttattggttaattttgcccac 42545092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 5818928 - 5818881
Alignment:
Q  100 tattaaatttgtgtgcccttcttccatgtgtgctagtactacggagct 147  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5818928 tattaaatttgtgtgcccttcttccatgtgtgctagtactatggagct 5818881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 7971 - 8012
Alignment:
Q  12 aaatgattcagttaattttgatatggttcggttcggttaacc 53  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7971 aaatggttcagttaattttgatatggttcggttcggttaacc 8012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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