View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13647_low_5 (Length: 211)
Name: NF13647_low_5
Description: NF13647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13647_low_5 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 2856258 - 2856088
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2856258 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggtt |
2856159 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2856158 |
acaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaat |
2856088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2768759 - 2768929
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||||||| || ||| || |
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| T |
2768759 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagatt |
2768858 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2768859 |
gcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaat |
2768929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 2758904 - 2759062
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
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| T |
2758904 |
gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt |
2759003 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacat |
178 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
2759004 |
acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacat |
2759062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2748688 - 2748858
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||| | || |||||||||||||||| | || | |||||||||||| ||| || |
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| T |
2748688 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagatt |
2748787 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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| T |
2748788 |
gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaat |
2748858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5412597 - 5412767
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| | |||| | || ||||||| |||||||| |||| | ||||||||||| ||| || |
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| T |
5412597 |
gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt |
5412696 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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||||| ||||||||||||||||||| |||| | || ||||| |||||||||||||||||||||||||| |
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| T |
5412697 |
gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaat |
5412767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 2839048 - 2838893
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||| | || |||||||||||||||| |||| | |||||||| || | | |
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| T |
2839048 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatctttatgcatga---ct |
2838952 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacat |
178 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
2838951 |
ccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacat |
2838893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2818247 - 2818417
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||| ||||| ||| ||| | ||||||| || ||| || |
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| T |
2818247 |
gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt |
2818346 |
T |
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| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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|||| ||| || ||||||| ||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
2818347 |
ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaat |
2818417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 2797051 - 2797213
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| | |||| ||||||||| |||||| ||| | |||||||||||| ||| || |
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| T |
2797051 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt |
2797150 |
T |
|
| Q |
120 |
acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaag |
182 |
Q |
| |
|
|||| | ||||||||| |||||| ||| ||| | || ||||| |||||| || |||||||| |
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|
| T |
2797151 |
gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaag |
2797213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 2755734 - 2755786
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttga |
72 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2755734 |
gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga |
2755786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 2790048 - 2790110
Alignment:
| Q |
20 |
gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggc |
82 |
Q |
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|||||||||||||||||||| ||||||| |||| |||||||| |||||| | || |||||||| |
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| T |
2790048 |
gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggc |
2790110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 6596 - 6430
Alignment:
| Q |
24 |
gaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaa |
123 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| |||| | ||||| |||||| ||| || || |
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| T |
6596 |
gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa |
6497 |
T |
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| Q |
124 |
gccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaat |
190 |
Q |
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||| |||||||||||||||| | | ||| | || ||||| |||||||||||||| ||| ||||||| |
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| T |
6496 |
gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaat |
6430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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