View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_high_5 (Length: 354)
Name: NF13648_high_5
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 15002056 - 15001718
Alignment:
| Q |
1 |
tcatcaccatgagtagagttgtttccatttgacatatacccttacctttgactataacaatttttgttcagactttacttattttcccggccaaactcca |
100 |
Q |
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| T |
15002056 |
tcatcaccatgagtagagttgtttccatttgacatatacccttacctt-gactataacaatttttgttcagactttacttattttcccggccaaactcca |
15001958 |
T |
|
| Q |
101 |
aattacca-tgtccctttttcttgggaaccaagtcttagaaaactcactccacaagaatatactctggactggttaagatgaaaaatattagaagaatat |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15001957 |
aattaccaatgtccctttttcttgggaaccaagtcttagaaaactcactccacaagaatatactctggactggtttagatgaaaaatattagaagaatat |
15001858 |
T |
|
| Q |
200 |
ataagtgaagtgcaaaagttaaaaccaagaacattgaacatgaattgcattgtttatacagggcctttaacaatggaagacgattacagcggaatccttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15001857 |
ataagtgaagtgcaaaagttaaaaccaagaacattgaacatgaattgcattgtttatacagggcctttaacaatggaagacgattacagcggaatccttc |
15001758 |
T |
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| Q |
300 |
caaagcttaaactgaatccctatggttggacacatatgtt |
339 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
15001757 |
caaagcttaaactgaatccatatggttggacacatatgtt |
15001718 |
T |
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