View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_high_9 (Length: 246)
Name: NF13648_high_9
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 8674699 - 8674948
Alignment:
| Q |
9 |
atgtttatgcaaaccattgtcaataattggttccgaaaaggaattgcaatattcttttaggaaattccttatgtgctcnnnnnnnnnnnnnaatagcata |
108 |
Q |
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| T |
8674699 |
atgtttatgcaaaccattgtcaataactggtttagaaaaagaattgcaatattctttttggaaatgccttatgtgctcttttattttttt-aatagcata |
8674797 |
T |
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| Q |
109 |
aagttgttcatctgttaatttcacctcagttatatgggtca----------------aaattattgaacaataaggtaaatttagtaccctcttatactt |
192 |
Q |
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| T |
8674798 |
aatttgctcatctgttaatttcacctcagttatatgagtcaaaatattaacctgtcaaaattattgaacaataaagtaaacttagtaccatcttatactt |
8674897 |
T |
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| Q |
193 |
gtcgcaccaatatagcgttgaaagtagataaaagttatagtataatctacc |
243 |
Q |
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| T |
8674898 |
gtcgcaccaatataacgtttaaagtacataaaagttataatataatgtacc |
8674948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 8719850 - 8719903
Alignment:
| Q |
100 |
aatagcataaagttgttcatctgttaatttcacctcagttatatgggtcaaaat |
153 |
Q |
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| T |
8719850 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaat |
8719903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 8592039 - 8592098
Alignment:
| Q |
146 |
gtcaaaattattgaacaataaggtaaatttagtacc-ctcttatacttgtcgcaccaata |
204 |
Q |
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| T |
8592039 |
gtcaaagttattgaacaataaagtaaatttagtaccatttttatacttgttgcaccaata |
8592098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 8719912 - 8719958
Alignment:
| Q |
146 |
gtcaaaattattgaacaataaggtaaatttagtaccctcttatactt |
192 |
Q |
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| T |
8719912 |
gtcaaaattattgaacaataaagtaaacttagtaccatcatatactt |
8719958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 8591977 - 8592026
Alignment:
| Q |
100 |
aatagcataaagttgttcatctgttaatttcacctcagttatatgggtca |
149 |
Q |
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| T |
8591977 |
aatagcacaaagttgatcttcagttaatttcacctcagttatatgagtca |
8592026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 8673555 - 8673523
Alignment:
| Q |
9 |
atgtttatgcaaaccattgtcaataattggttc |
41 |
Q |
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| T |
8673555 |
atgtttatgcaaaccattgtcaataactggttc |
8673523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 23438038 - 23437872
Alignment:
| Q |
13 |
ttatgcaaaccattgtcaataattggttccgaaaaggaattgcaatattcttttaggaaattccttatgtgctcnnnnnnnnnnnnnaatagcataaagt |
112 |
Q |
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| T |
23438038 |
ttatgcaaaccattgtcaataattggttcaggaaaagaattgcaatattcattttggaaatgccttatgtgctctttttatttttttaatagcataaagt |
23437939 |
T |
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| Q |
113 |
tgttcatctgttaatttcacctcagttatatgggtcaaaattattgaacaataaggtaaatttagtac |
180 |
Q |
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| T |
23437938 |
tgttcatctgttaatttcacctcagttatatgagtcaaaa-tattgaacaataaagtaaacttagtac |
23437872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 23437616 - 23437549
Alignment:
| Q |
176 |
agtaccctcttatacttgtcgcaccaatatagcgttgaaagtagataaaagttatagtataatctacc |
243 |
Q |
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| T |
23437616 |
agtaccattttatacttgtcgcaccaatatagcattgaaagtacataaaagttataatataatgtacc |
23437549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 23439339 - 23439376
Alignment:
| Q |
9 |
atgtttatgcaaaccattgtcaataattggttccgaaa |
46 |
Q |
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| T |
23439339 |
atgtttatgcaaaccattgtcaataactggttcagaaa |
23439376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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