View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_low_3 (Length: 657)
Name: NF13648_low_3
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_low_3 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 65 - 572
Target Start/End: Complemental strand, 41572907 - 41572399
Alignment:
| Q |
65 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgac |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41572907 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatggc |
41572808 |
T |
|
| Q |
165 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572807 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
41572708 |
T |
|
| Q |
265 |
gatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaag |
363 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41572707 |
gatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaag |
41572608 |
T |
|
| Q |
364 |
gttatatcgaggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgag |
463 |
Q |
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|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572607 |
gttatatcgtggagatgtattcttagccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgag |
41572508 |
T |
|
| Q |
464 |
gaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggca |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572507 |
gaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggca |
41572408 |
T |
|
| Q |
564 |
gcctcatta |
572 |
Q |
| |
|
|||| |||| |
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|
| T |
41572407 |
gccttatta |
41572399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 41572996 - 41572939
Alignment:
| Q |
16 |
gaaaccacggtctcggttgccttttcttggaagttgtttcatgacaggatccggacga |
73 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41572996 |
gaaaccacggtctcggttgccttttcttggaagttgtttcatgacaggatcccgacga |
41572939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 68 - 572
Target Start/End: Original strand, 27753590 - 27754102
Alignment:
| Q |
68 |
ggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtg |
167 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||| ||| |
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| T |
27753590 |
ggacgattcggtgaattgtgttctgtgtgaggggaatccggagtcggcaagtcactt-ttcattcaatgctcctttgctaaggaggggtggaatggggtg |
27753688 |
T |
|
| Q |
168 |
ttgaggtgg---------ctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggatt |
258 |
Q |
| |
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||||||| | ||||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27753689 |
ctgaggtgttagagatgaccttggagcttccgatcaatttgtttctgctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggatt |
27753788 |
T |
|
| Q |
259 |
ccgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtacggtggaggct |
357 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||| |||||| ||||||||||||| |
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| T |
27753789 |
ccggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggct |
27753888 |
T |
|
| Q |
358 |
gtgaaggttatatcgaggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggt |
457 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27753889 |
gtgaaggttatgtcgtggagatggtttcttagccgtttgaaggtgccggcgtgtttgttctacgagtgaagttggaatccaaaagcgtgcctcttacggt |
27753988 |
T |
|
| Q |
458 |
aatgaggaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcat |
557 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27753989 |
aatgaggaggtgttcagcggttttagcagt-aacaagtttgaggctggggtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcat |
27754087 |
T |
|
| Q |
558 |
atggcagcctcatta |
572 |
Q |
| |
|
||||||||||||||| |
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| T |
27754088 |
atggcagcctcatta |
27754102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 10909566 - 10909508
Alignment:
| Q |
263 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
321 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| |
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| T |
10909566 |
ttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 27753512 - 27753547
Alignment:
| Q |
30 |
ggttgccttttcttggaagttgtttcatgacaggat |
65 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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| T |
27753512 |
ggttgtcttttcttggaagttgtttcatgacaggat |
27753547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 178 - 571
Target Start/End: Complemental strand, 21942311 - 21941917
Alignment:
| Q |
178 |
tatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgcc |
277 |
Q |
| |
|
||||||||||| | | || ||||| |||||||| ||| |||||||||||||| || | ||| ||| || ||||| ||||| ||| ||||||| ||| |
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|
| T |
21942311 |
tatggagcttctgttaaatttgtttgtgctgtgggaggtctggaatgtggcagcgggtaataatgggattcgcaagggcttccggttggtttggcatgcc |
21942212 |
T |
|
| Q |
278 |
gtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgt-cggtggagggtacggtggaggctgtgaaggttatatcgagga |
376 |
Q |
| |
|
|| ||||| ||| | | ||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||||||||| |||||||| || ||| ||| |
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|
| T |
21942211 |
gtcgtgtgaaatctttggagggtgagaaatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtgga |
21942112 |
T |
|
| Q |
377 |
gatgtattctt-tgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaa-tgaggaggtgttcag |
474 |
Q |
| |
|
|||| ||||| ||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||| || | | | || | |
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|
| T |
21942111 |
gatg-gttcttgagccgtttaaagatgccgacgtgtttgttctacgagtggtgttggaatccaaaagcatgtctcttacagtaacggacgggtttctctg |
21942013 |
T |
|
| Q |
475 |
cggttttagcagtaaacaagtttgaggctggggtatcctgtg-tatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatt |
571 |
Q |
| |
|
| ||||| |||| ||||| ||||||||||||||| | ||| || ||||||||||| |||||||| ||||||||| | | |||||||||||||||| |
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| T |
21942012 |
cagttttcgcag-ctacaagattgaggctggggtatgccgtgttaaattgcggtgacatgtgctgg-tttgtgcaggatggtatatggcagcctcatt |
21941917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 26728609 - 26728711
Alignment:
| Q |
74 |
ttcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtgttgagg |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||| | || ||| ||||||||||| ||| ||||||||||||||| ||||| | ||||| |||| |
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| T |
26728609 |
ttcggtgagctgtgttttgtgtgaggggaatgcagagtccgtgaatcatttgttcattcattgtaagtttgctatggaggtgtggaaaggcgtgtggagg |
26728708 |
T |
|
| Q |
174 |
tgg |
176 |
Q |
| |
|
||| |
|
|
| T |
26728709 |
tgg |
26728711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 13725863 - 13725921
Alignment:
| Q |
263 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
321 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13725863 |
ttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaa |
13725921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 26728806 - 26728864
Alignment:
| Q |
260 |
cgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaatttt |
318 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | ||| ||||| ||||||||| |||||||| |
|
|
| T |
26728806 |
cgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttt |
26728864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 138683 - 138728
Alignment:
| Q |
394 |
ttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaa |
439 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
138683 |
ttgaacgtgccggcttgtttgttttacgagtggagttggaacccaa |
138728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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