View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_low_4 (Length: 409)
Name: NF13648_low_4
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7742279 - 7742465
Alignment:
| Q |
20 |
tctccttcaccctcgtttcaagaacaaaattccaatcgtaaagcttccatattccaattccaatcgtaaagcttccaacaaaaacaaaattcgttaaaat |
119 |
Q |
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| T |
7742279 |
tctccttcaccctcgtttcaagaacaaaattccaatcgtaaagcttccatattccaattccaatcgtaaagcttccaacaaaaacaaaattcgttaaaat |
7742378 |
T |
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| Q |
120 |
tcaatctagggtttgcagcgatgagtcgtcgtcgacgaatgcatgaagatgaagatgaagaggatgaaagaggcggcggcggtggaaataagc |
212 |
Q |
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| T |
7742379 |
tcaatctagggtttgcagcgatgagtcgtcgtcgacgaatgc------atgaagatgaagaggatgaaagaggcggcggcggtggaaataagc |
7742465 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 40863619 - 40863671
Alignment:
| Q |
344 |
aaggtttctgctttgaatttctttgatgaagaggctgatgttgattctgatga |
396 |
Q |
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| T |
40863619 |
aaggtttccgcttcaaatttctttgacgaagaggctgctgttgattcggatga |
40863671 |
T |
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