View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_low_5 (Length: 399)
Name: NF13648_low_5
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 31040747 - 31040404
Alignment:
| Q |
19 |
cttacacacctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctatgaatactcttatttagtgcttccac |
118 |
Q |
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| T |
31040747 |
cttacacacctctcttacttctccactattttcattacaccttctttcttgctgcaatgtattcattatttctatgaatactcttatttagtgcttccac |
31040648 |
T |
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| Q |
119 |
tgttcccattactctgttttgnnnnnnnnnngt-----attctatgaatatactacttcaaggatactggtgatttcattttcatatataagtttaggaa |
213 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040647 |
tgttcccattactctgttttttttttttttttttttggattctatgaatatactacttcaaggatactggtgatttcattttcatatataagtttaggaa |
31040548 |
T |
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| Q |
214 |
tctgtaatttcaaatgaatatatgaagagtgaaatgaaactttataattttattttaataaaaatgagttagcctcaatattaaaataaaataaagaact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040547 |
tctgtaatttcaaatgaatatatgaagagtgaaatgaaactttataattttattttaataaaaatgagttagcctcaatattaaaataaaataaagaact |
31040448 |
T |
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| Q |
314 |
aatatgctattacatgggccactcaacaaactattagagaatca |
357 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31040447 |
aatatgctattacatgggccactcaacaaaatattagagaatca |
31040404 |
T |
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