View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13648_low_9 (Length: 267)
Name: NF13648_low_9
Description: NF13648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13648_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 13658417 - 13658634
Alignment:
| Q |
33 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
132 |
Q |
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| T |
13658417 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
13658516 |
T |
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| Q |
133 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
232 |
Q |
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| T |
13658517 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
13658616 |
T |
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| Q |
233 |
attgaaggagcttgagga |
250 |
Q |
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| T |
13658617 |
attgaaggagcttgagga |
13658634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 13647889 - 13648106
Alignment:
| Q |
33 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
132 |
Q |
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||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||| |||||||| ||| |||||||||||||||| |||| || |||| |
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| T |
13647889 |
aagagcaatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaa |
13647988 |
T |
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| Q |
133 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
232 |
Q |
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| T |
13647989 |
tgaagagagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggatt |
13648088 |
T |
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| Q |
233 |
attgaaggagcttgagga |
250 |
Q |
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| T |
13648089 |
attaagtgagcttgagga |
13648106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 13652949 - 13653161
Alignment:
| Q |
38 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
137 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| | |
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| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
|
| Q |
138 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattga |
237 |
Q |
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|||||||||| ||||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| | | |
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| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataa |
13653148 |
T |
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| Q |
238 |
aggagcttgagga |
250 |
Q |
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| || |||||||| |
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| T |
13653149 |
aagaacttgagga |
13653161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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