View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_high_2 (Length: 411)
Name: NF13649_high_2
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 35905408 - 35905010
Alignment:
| Q |
1 |
ctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttgatagaagtctttgataagaaaaagtaaaatgaaaattata |
100 |
Q |
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| T |
35905408 |
ctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttgatagaagtctttgataagaaaaagtaaaatgaaaattata |
35905309 |
T |
|
| Q |
101 |
ttcataacgagagaatatgaaacgtcaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaattaactaattt |
200 |
Q |
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| T |
35905308 |
ttgataacgagagaatatgaaacgtgaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaattaactaattt |
35905209 |
T |
|
| Q |
201 |
tatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacaggatcagggaa |
300 |
Q |
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| T |
35905208 |
tatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacaggatcagggaa |
35905109 |
T |
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| Q |
301 |
gagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
399 |
Q |
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| T |
35905108 |
gagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
35905010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 30522167 - 30522111
Alignment:
| Q |
52 |
ttattcttgatagaagtctttgata-agaaaaagtaaaatgaaaattatattcataa |
107 |
Q |
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| T |
30522167 |
ttatttttgatagaagtcattgatatagaaaaagtaaaatggaaattatattgataa |
30522111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 47624163 - 47624233
Alignment:
| Q |
329 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
399 |
Q |
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|||||| | ||||| || ||||| ||||| || ||||||||||| |||||||||||||| | ||||||||| |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatga |
47624233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 484018 - 483972
Alignment:
| Q |
53 |
tattcttgatagaagtctttgataaga-aaaagtaaaatgaaaatta |
98 |
Q |
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| T |
484018 |
tattcttaatagaagtcattgataagagaaaagtaaaatgaaaatta |
483972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 13868806 - 13868847
Alignment:
| Q |
156 |
tatagccaatgagaataacaactaactagtgtaattaactaa |
197 |
Q |
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| T |
13868806 |
tatagccaatgagaataacgactaactaatgtaactaactaa |
13868847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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