View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_high_5 (Length: 349)
Name: NF13649_high_5
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 11559493 - 11559814
Alignment:
| Q |
1 |
atacattttgctgagtttgattggactaaaattaattcaaacaattaattccctacgcgtcctaatactgtttctggttgctggttttgttgttttgatc |
100 |
Q |
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| T |
11559493 |
atacattttgctgagtttgattggactaaaattaattcaaacaattaattccctacgcgtcctaatactatttctggttgctggttttgttgttttgata |
11559592 |
T |
|
| Q |
101 |
ccggagatctgtaagcatagcttttaggttaagggttgtcttaacacaactttcgtgttgctcctaattagactcggattgattgaccataaatgggtgt |
200 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
11559593 |
ccggagatctgtaagcatagtttttgggttaagggttgtcttaacacaactttcgtgttgctcctaattagactcagattgattgaccagaaatggttgc |
11559692 |
T |
|
| Q |
201 |
tgagacttgtttttgttgggtcaactcggtgggtggtgggtggaccggtttccgtgttggtggtctcgtttactcaccgttatcacaatctctattcgtt |
300 |
Q |
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| T |
11559693 |
tgagacttgtttttgttgggtcaactcggtggatggtgggtggaccggtttccgtgttggtggtctcgtttactcaccgttatcacaatctctattcgtt |
11559792 |
T |
|
| Q |
301 |
gcatttcaacacacacttcata |
322 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
11559793 |
gcatttcagcacacacttcata |
11559814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 285
Target Start/End: Complemental strand, 25657430 - 25657219
Alignment:
| Q |
74 |
ctggttgctggttttgttgttttgatcccggagatctgtaagcatagcttttaggttaagggttgtcttaacacaactttcgtgttgctcctaattagac |
173 |
Q |
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| T |
25657430 |
ctggctgctggttttgttgttttgatactggagatttgtaagctaagcttctaggttgagggttgtcttaacacaacttttgtgttgctcataattagac |
25657331 |
T |
|
| Q |
174 |
tcggattgattgaccataaatgggtgttgagacttgtttttgttgggtcaactcggtgggtggtgggtggaccggtttccgtgttggtggtctcgtttac |
273 |
Q |
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|| |||| |||||||||||||| ||| |||| | ||| ||||||||| |||| ||||||| |||||||||| |||| |||||||| | || ||| || |
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| T |
25657330 |
tcaaattgtttgaccataaatggttgtggagagtagttgatgttgggtcgactcagtgggtgctgggtggacccgttttcgtgttggcgatcgggttcac |
25657231 |
T |
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| Q |
274 |
tcaccgttatca |
285 |
Q |
| |
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| T |
25657230 |
taaccgttatca |
25657219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 30917766 - 30917714
Alignment:
| Q |
158 |
ttgctcctaattagactcggattgattgaccataaatgggtgttgagacttgt |
210 |
Q |
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| T |
30917766 |
ttgctcctaattagactcaaattgtttgaccataaatggttgtggagacttgt |
30917714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 9508270 - 9508424
Alignment:
| Q |
154 |
cgtgttgctcctaattagactcggattgattgaccataaatgggtgttgagacttgtttttgttgggtcaactcggtgggtggtgggtggaccggtttcc |
253 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||| |||||||||||| |||| |||||| |
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| T |
9508270 |
cgtgttgatcctagttagactcggattgattgaccataaatggttgttgagagttgttgttgttgggtctactcaatgggtggtgggttgacccgtttcc |
9508369 |
T |
|
| Q |
254 |
gtgttggtggtctcgtttactcaccgttatcacaatctctattcgttgcatttca |
308 |
Q |
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|||| || ||||| ||| |||||| ||||||| ||| | ||| ||||||||||| |
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| T |
9508370 |
gtgtcggcggtcttgttcactcactgttatcataatatgcatttgttgcatttca |
9508424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 1773880 - 1773759
Alignment:
| Q |
74 |
ctggttgctggttttgttgttttgatcccggagatctgtaagcatagcttttaggttaagggttgtcttaacacaactttcgtgttgctcctaattagac |
173 |
Q |
| |
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||||||||| |||||||||| |||| || |||||| ||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
1773880 |
ctggttgcttgttttgttgtcttgaacc-ggagattcgtaagcacgacttttgggttgagggttgtcttaacacaacttttatgttgctcctaattagac |
1773782 |
T |
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| Q |
174 |
tcggattgattgaccataaatgg |
196 |
Q |
| |
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| |||||| | |||||||||||| |
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| T |
1773781 |
ttggattgttggaccataaatgg |
1773759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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