View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_high_9 (Length: 250)
Name: NF13649_high_9
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_high_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 2598990 - 2599202
Alignment:
| Q |
38 |
cttggaatctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagctaaatagctattg-tgtttt |
136 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||| | |||| |
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| T |
2598990 |
cttgaaatctgagagtgtgctcttcttcaacgtcttaggtttgattatatctggtgttaatttgggttgggtaatttagctaaatagctattgttttttt |
2599089 |
T |
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| Q |
137 |
gattggttatgtaatccatgttgtctttcgatgtctttgtaaagacttgatatgtacatgggttagactttagagtaccgcttgtactttttgaaattaa |
236 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
2599090 |
gattggttatgtaatcaatgttgtctttcaatgtctttgtaaagacttgatatgtacatgggtta-actttagagtaccccttgtactttttgaaattaa |
2599188 |
T |
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| Q |
237 |
tttttgcttatcta |
250 |
Q |
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|||||||||||||| |
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| T |
2599189 |
tttttgcttatcta |
2599202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 9964468 - 9964546
Alignment:
| Q |
38 |
cttggaatctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttag |
116 |
Q |
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||||| ||||| ||||||||||||| |||| |||| ||||||||| |||||| ||| |||||| | | ||||||||||| |
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| T |
9964468 |
cttgggatctgggagtgtgctcttcctcaatgtctcaggtttgattatctccagtgctaattttgatgggctaatttag |
9964546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 51814530 - 51814604
Alignment:
| Q |
44 |
atctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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| T |
51814530 |
atctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaatttagct |
51814604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 15065003 - 15065075
Alignment:
| Q |
46 |
ctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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| T |
15065003 |
ctgagagtgtgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagct |
15065075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 5273625 - 5273556
Alignment:
| Q |
49 |
agagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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| T |
5273625 |
agagtgtgctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtgggctagtttagct |
5273556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 9183231 - 9183159
Alignment:
| Q |
44 |
atctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttag |
116 |
Q |
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||||| |||||||||| || |||| |||| ||||| ||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
9183231 |
atctgggagtgtgctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaatttag |
9183159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 41519145 - 41519076
Alignment:
| Q |
49 |
agagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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| T |
41519145 |
agagtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaatttagct |
41519076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 51954175 - 51954224
Alignment:
| Q |
69 |
gtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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|||| ||||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
51954175 |
gtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagct |
51954224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 42644956 - 42644876
Alignment:
| Q |
38 |
cttggaatctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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||||| ||||||||||||| ||||| |||| |||| ||||| ||| |||||| || |||||||| | | ||||||||||| |
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| T |
42644956 |
cttgggatctgagagtgtgttcttcctcaaagtctcaggttcgattatctccaatgctaatttggttggactaatttagct |
42644876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 31520651 - 31520571
Alignment:
| Q |
38 |
cttggaatctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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||||| ||||| |||||||||| || || | |||||||||||||| ||||| |||| |||||| || ||||||||||||| |
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| T |
31520651 |
cttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgggctaatttagct |
31520571 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 42602596 - 42602664
Alignment:
| Q |
50 |
gagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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|||||||||| | |||| |||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
42602596 |
gagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaatttagct |
42602664 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 87469 - 87390
Alignment:
| Q |
38 |
cttggaatctgagagtgtgctcttcttcaacgtcttaggtttgataatctccggtgttaatttgggttggctaatttagct |
118 |
Q |
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||||||||||| |||||||||| || |||| |||| ||||||||| |||| |||| |||||| || ||||||||||||| |
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| T |
87469 |
cttggaatctgggagtgtgctcctcctcaaggtctcaggtttgat-tcctccagtgtcaatttgagtgggctaatttagct |
87390 |
T |
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