View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_low_13 (Length: 237)
Name: NF13649_low_13
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 41344903 - 41345124
Alignment:
| Q |
16 |
cagagatttcctcgtcgcaacagctacataagatggctccattgaaaattcgacctgttatcggtttttccccatcatggtaacgcacctgggtcccttc |
115 |
Q |
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| T |
41344903 |
cagagatttcctcgtcgcaacagctacataagatggctccattgaaaattcgacctgttatcggtttttccccatcatggtaacgcacctgggtcccttc |
41345002 |
T |
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| Q |
116 |
atcaatttccttgcaagctgtcaaccatgctaggatggnnnnnnnataatgttttattgttggttgacgcaataatggttcgggaattgatgatgaagtt |
215 |
Q |
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| T |
41345003 |
atcaatttccttgcaagctgtcaaccatgctaggatggtttttttattatgttttattgttggttgacgcggtaatggttcgggaattgatgatgaagtt |
41345102 |
T |
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| Q |
216 |
gtttccatcgtcaaactatgtt |
237 |
Q |
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| T |
41345103 |
gtttccatcgtcaaactatgtt |
41345124 |
T |
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