View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_low_16 (Length: 206)
Name: NF13649_low_16
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 34249001 - 34249184
Alignment:
| Q |
7 |
catcatcatcatcatttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctctatcccaacaacgttgcattcatcaatcagc |
106 |
Q |
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| T |
34249001 |
catcatcatcatcatttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctctatcccaacaacgttgcattcatcaatcagc |
34249100 |
T |
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| Q |
107 |
actagccaatcatcattcccaaacactaggtatcccttatatcattaatgttgttatcatggttatgaatactcgcgtttgttt |
190 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34249101 |
actagctaatcatcattcacaaacactaggtatcccttatatcattaatgttgttatcatggttatgaatactcgcgtgtgttt |
34249184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 34258122 - 34258286
Alignment:
| Q |
7 |
catcatcatcatcatttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctctatcccaacaacgttgcattcatcaatcagc |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
34258122 |
catcatcatcatcatttcattcccattttgtttcttttactctttcaacaacctacagggttaactctctctcccaacaacattgcattcatcaatcagc |
34258221 |
T |
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| Q |
107 |
actagccaatcatcattcccaaacactaggtatcccttatatcattaatgttgttatcatggtta |
171 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34258222 |
actagtcaatcatcattcccaaacactaggtatcccttacatcattaatgttgttatcatggtta |
34258286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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