View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13649_low_4 (Length: 395)
Name: NF13649_low_4
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_low_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 24381643 - 24382020
Alignment:
| Q |
19 |
acccggcactgcagacagagtccaaaagaaaaggccggacctgcaggaaaaactgaaatcatctcttttgttcattctttgacannnnnnnngttaacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24381643 |
acccggcactgcagacagagtccaaaagaaaaggccggacctgcaggaaaaactgaaatcatctcttttgttcattctttgacattttttttgttaacat |
24381742 |
T |
|
| Q |
119 |
gcataaataatctaatgcagttatatatatgaataataggatttatgc-tttgttctaaaatttatcttttgctaagttttcagagaaaggaagaagtgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24381743 |
gcataaataatctaatgcagttatatatatgaataataggatttatgcatttgttctaaaatttatcttttgctaagttttcagagaaaggaagaagtgc |
24381842 |
T |
|
| Q |
218 |
atcacaaagaaaatccattaaaccctgtgctaatataggccattgaaggttgaattatattgcataatgttgtagtcttatatgaggaaaagggtaaatt |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24381843 |
atcacaaagaaaatccattaagccctgtgctaatataggccattgaaggttgaattatattgcataatgttgtagtcttatatgaggaaaagggtacatt |
24381942 |
T |
|
| Q |
318 |
ctatttgaacatttcaaaattaagtacaaataagtcattcaaaattaagtacaaataatcataaacaaaataagaagt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24381943 |
ctatttgaacatttcaaaattaagtacaaataagtcattcaaaattaagtacaaataatcataaacaaaataagaagt |
24382020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 43539416 - 43539465
Alignment:
| Q |
33 |
acagagtccaaaagaaaaggccggacctgcaggaaaaactgaaatcatct |
82 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
43539416 |
acagagtccaaaagaaaaggcctaacctgcagcaaaaactgaaatcatct |
43539465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 35675893 - 35675941
Alignment:
| Q |
34 |
cagagtccaaaagaaaaggccggacctgcaggaaaaactgaaatcatct |
82 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
35675893 |
cagagttcaaaagaaaaggcctaacctgcagcaaaaactgaaatcatct |
35675941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 43539593 - 43539658
Alignment:
| Q |
270 |
aattatattgcataatgttgtagtcttatatgaggaaaagggtaaattctatttgaacatttcaaaa |
336 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||| ||| |||| || ||||| ||||||||| |
|
|
| T |
43539593 |
aattctattgcctaatgttgtagtcttatatgagtaaaaaggt-aattataattgaaaatttcaaaa |
43539658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 29980053 - 29980005
Alignment:
| Q |
34 |
cagagtccaaaagaaaaggccggacctgcaggaaaaactgaaatcatct |
82 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
29980053 |
cagagtccaaaagaaaaggcctaacctgcagcaaaaactgaaatcatct |
29980005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University