View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13649_low_5 (Length: 382)

Name: NF13649_low_5
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13649_low_5
NF13649_low_5
[»] chr6 (50 HSPs)
chr6 (1-361)||(28180797-28181175)
chr6 (1-361)||(28185049-28185427)
chr6 (1-259)||(28234367-28234625)
chr6 (1-256)||(28226754-28227011)
chr6 (1-252)||(28325291-28325542)
chr6 (1-200)||(28242666-28242865)
chr6 (1-220)||(28297839-28298058)
chr6 (1-220)||(28514015-28514234)
chr6 (1-234)||(26342060-26342290)
chr6 (1-206)||(27724971-27725176)
chr6 (15-180)||(28491660-28491825)
chr6 (1-206)||(28786134-28786339)
chr6 (1-206)||(28792255-28792460)
chr6 (15-180)||(29804070-29804235)
chr6 (8-198)||(26893604-26893794)
chr6 (1-206)||(26802298-26802503)
chr6 (1-206)||(27718505-27718710)
chr6 (126-240)||(2184113-2184224)
chr6 (43-119)||(27214360-27214436)
chr6 (43-119)||(27234792-27234868)
chr6 (96-234)||(28098590-28098725)
chr6 (43-118)||(26811453-26811528)
chr6 (1-188)||(27611128-27611315)
chr6 (1-99)||(27338191-27338289)
chr6 (1-99)||(27398931-27399029)
chr6 (307-361)||(28149375-28149429)
chr6 (1-206)||(27698620-27698825)
chr6 (43-119)||(26617269-26617345)
chr6 (43-119)||(26723197-26723273)
chr6 (1-145)||(31284205-31284349)
chr6 (1-144)||(28781057-28781200)
chr6 (1-99)||(25579682-25579780)
chr6 (1-167)||(26622871-26623037)
chr6 (1-167)||(26728849-26729015)
chr6 (1-99)||(27593146-27593244)
chr6 (2-99)||(25481705-25481802)
chr6 (13-202)||(26936954-26937143)
chr6 (1-206)||(27229088-27229293)
chr6 (1-62)||(27677740-27677801)
chr6 (1-62)||(27678946-27679007)
chr6 (68-124)||(26848598-26848654)
chr6 (1-37)||(27706528-27706564)
chr6 (1-189)||(28139414-28139602)
chr6 (1-188)||(26884037-26884224)
chr6 (1-99)||(26142828-26142926)
chr6 (70-119)||(26949604-26949653)
chr6 (1-206)||(27604831-27605036)
chr6 (1-37)||(26646504-26646540)
chr6 (1-37)||(26752472-26752508)
chr6 (1-145)||(26861533-26861677)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-276)||(58408-58683)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-259)||(34528-34786)
scaffold0038 (1-256)||(27252-27509)
scaffold0038 (1-252)||(116606-116857)
scaffold0038 (1-200)||(42828-43027)
[»] chr2 (2 HSPs)
chr2 (1-195)||(3279555-3279749)
chr2 (43-140)||(17993852-17993949)
[»] chr8 (1 HSPs)
chr8 (3-185)||(31903728-31903910)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-206)||(3548-3753)
scaffold0349 (1-206)||(14481-14686)
[»] chr4 (5 HSPs)
chr4 (3-200)||(5091082-5091279)
chr4 (4-206)||(18731620-18731822)
chr4 (4-206)||(18655593-18655795)
chr4 (4-206)||(18724201-18724403)
chr4 (4-206)||(18699516-18699718)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-206)||(4797-5002)
scaffold0277 (1-144)||(13758-13901)
[»] scaffold0781 (1 HSPs)
scaffold0781 (126-240)||(102-213)
[»] chr5 (1 HSPs)
chr5 (3-206)||(16688867-16689070)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-167)||(43-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-167)||(7420-7586)
[»] chr1 (1 HSPs)
chr1 (1-99)||(268470-268568)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 28181175 - 28180797
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28181175 aaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 28181076  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28181075 aaagagctctattgagatttccagtaaaaccataacgagtgtcaccacctctaaagctaaggaacgcgtcataggtgaatccataggagaaggaagagga 28180976  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaa------------------gaatttggatgagtgtatatataggg 282  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                  |||| |||||||||||||||||||||    
T  28180975 tgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggatgagtgtatatataggg 28180876  T
Q  283 tttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28180875 tttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattt 28180797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 28185427 - 28185049
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28185427 aaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 28185328  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    |||||||||||  ||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28185327 aaagagctctattgagatttccagtaaaacgataacgagtgtcactacctctaaagctaaggaacacgtcataggtgaatccataggagaaggaagagga 28185228  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaa------------------gaatttggatgagtgtatatataggg 282  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                  |||| |||||||||||||||||||||    
T  28185227 tgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggatgagtgtatatataggg 28185128  T
Q  283 tttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28185127 tttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattt 28185049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 28234625 - 28234367
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||||| |||||||| ||||||||  |||||||||||| ||    
T  28234625 aaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgac 28234526  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||||||||| |||||||| | | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||    
T  28234525 aaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggagaaagaagaaga 28234426  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaa 259  Q
     | || ||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||    
T  28234425 gggggggacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaa 28234367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 28227011 - 28226754
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||| ||||| | ||| ||  | |||||||| | ||    
T  28227011 aaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattcccttcttac 28226912  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| | ||  |||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |     
T  28226911 aaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcataggtgaatccataagagaaggaagaagg 28226812  T
Q  201 tgaggagacggatgattgaggcatagcc--atgagaatagagaataaaaaggaagtaa 256  Q
     |  ||||||||||||||| ||||||||  |||||||||||||||| |||||||||||    
T  28226811 gggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaa 28226754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 28325542 - 28325291
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||| | | ||||||| ||||||| |||||| ||| ||||||| |||||||| || |||| |||   ||    
T  28325542 aaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctac 28325443  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  28325442 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaa 252  Q
     || |||| |||||||||| | | |||||||||| ||| ||||||| |||||    
T  28325342 ggaagagatggatgattgaagtagagccatgagagtagtgaataaagaggaa 28325291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 28242865 - 28242666
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||  ||||||||| |||| ||||||||||| |||||||| || |||||||| | ||    
T  28242865 aaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttac 28242766  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| |||||||| || |||||||| || |||||||||  |||||||||    
T  28242765 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagacatcataggtaaacccataggagagggaagagga 28242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28297839 - 28298058
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||| ||||||||||  ||||| |||||||| | ||||||| |||||||||| ||||||||||||||| |||||||| || ||||||||   ||    
T  28297839 aaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctctgtcatcaatgaaggtgcgaattcccttcctac 28297938  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |   ||||||||||  |||||  ||||| ||||||| ||||||||| || ||||| |||||||  ||||||||||||||| ||||||||||    
T  28297939 aaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacgtcatgagtgaatccataggagaaggaagagga 28298038  T
Q  201 tgaggagacggatgattgag 220  Q
     || |||| |||||||||||    
T  28298039 ggaagagatggatgattgag 28298058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28514234 - 28514015
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||| ||||||||||  ||||| |||||||| | ||||||| |||||||||| ||||||||||||||| |||||||| || ||||||||   ||    
T  28514234 aaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctctgtcatcaatgaaggtgcgaattcccttcctac 28514135  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |   ||||||||||  |||||  ||||| ||||||| ||||||||| || ||||| |||||||  ||||||||||||||| ||||||||||    
T  28514134 aaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacgtcatgagtgaatccataggagaaggaagagga 28514035  T
Q  201 tgaggagacggatgattgag 220  Q
     || |||| |||||||||||    
T  28514034 ggaagagatggatgattgag 28514015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 26342060 - 26342290
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||| |||||||||||||| |||| |||||||  | | ||||  |||||||| |||||||| || ||||| |||||||| |||| |||   |||||    
T  26342060 aaaatcctggactcttcaatggctttgacaagtgattgtgtgattttgtcacctccatgaagctccctatcatcaatgaaggtgcggactccaccgtcac 26342159  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    | ||||||||| ||| ||| |||| |||||||||||||||| ||   || |||||  | |||||||| ||||| ||||||||||| ||| | |||||| |    
T  26342160 atagagctctatagatattgccagtaaaaccatagcgagtgccaatgcccctaaaattgaggaacacatcatatgtgaatccatatgagaatgaagagaa 26342259  T
Q  201 tgaggagacggatgattgaggcatagccatgaga 234  Q
     |||||    ||||||||  ||||||||||||||    
T  26342260 agagga---cgatgattggagcatagccatgaga 26342290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27724971 - 27725176
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  27724971 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 27725070  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| ||||||||||| |  || ||||||||||||||  | ||||||||    
T  27725071 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagagga 27725170  T
Q  201 tgagga 206  Q
    ||||||    
T  27725171 tgagga 27725176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 28491660 - 28491825
Alignment:
Q  15 ttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacag 114  Q
    ||||||||| ||||| ||||||| | | ||||||||||||  |||||||||   ||| |||||||| || |||| ||| ||||||   |||||| | ||     
T  28491660 ttcaatggctttgatgagtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccat 28491759  T
Q  115 agatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaat 180  Q
    ||||||||||  ||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||    
T  28491760 agatttccagtgaaaccgtagcgagtatcctcacctcgaaagctaaggaacacatcataggtgaat 28491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28786339 - 28786134
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  28786339 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 28786240  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || ||||||||||||||  | ||||||||    
T  28786239 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 28786140  T
Q  201 tgagga 206  Q
    ||||||    
T  28786139 tgagga 28786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28792460 - 28792255
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  28792460 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 28792361  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || ||||||||||||||  | ||||||||    
T  28792360 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 28792261  T
Q  201 tgagga 206  Q
    ||||||    
T  28792260 tgagga 28792255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 29804070 - 29804235
Alignment:
Q  15 ttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacag 114  Q
    ||||||||| ||||| ||||||| | | ||||||||||||  |||||||||   ||| |||||||| || |||| ||| ||||||   |||||| | ||     
T  29804070 ttcaatggctttgatgagtgatggtgtgatttcttcacctttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccat 29804169  T
Q  115 agatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaat 180  Q
    ||||||||||  ||||| |||||||| ||  |||||| ||||||||||||||| ||||||||||||    
T  29804170 agatttccagtgaaaccgtagcgagtatcctcacctcgaaagctaaggaacacatcataggtgaat 29804235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 26893604 - 26893794
Alignment:
Q  8 tagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagc 107  Q
    ||||||||||||| |||||||||||||||| |   ||||| |||||||  ||||||||| | ||||| ||||||||  | |||||  | |||||||||||    
T  26893604 tagactcttcaattgccttgataagtgatggtgagatttcgtcacctctatgaagctctgtatcatcaatgaaggtgtgaattccactatcacaaagagc 26893703  T
Q  108 tctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagag 198  Q
    | || | ||||  || | ||||||| | |||||||||   ||||||||  | ||||| || || |||||||||||||| ||||||||||||    
T  26893704 tttataaagatgacccgtaaaaccaaaacgagtgtcagagcctctaaaattgaggaagacatcgtaggtgaatccatacgaggaggaagag 26893794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26802503 - 26802298
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||| ||||| ||||||||||||||||| ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  26802503 aaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaa 26802404  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  ||||||| || | |||||| || |||||||||   || ||||| || |||||||| |  || ||||||||||| ||  | ||||||||    
T  26802403 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 26802304  T
Q  201 tgagga 206  Q
    ||||||    
T  26802303 tgagga 26802298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27718505 - 27718710
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  27718505 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 27718604  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||  |  |||||||||   || ||||| || |||||||| |  || |||||||||| |||| | ||||||||    
T  27718605 taagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagagga 27718704  T
Q  201 tgagga 206  Q
    ||||||    
T  27718705 tgagga 27718710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 2184224 - 2184113
Alignment:
Q  126 aaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 225  Q
    |||||||| |||||||||| | ||||| || || |||||||||| ||||||||||   | ||||||||| || || ||||||   |||||||| ||||||    
T  2184224 aaaaccatggcgagtgtcagctcctctgaaacttaggaacacgttataggtgaat---ttggaggaggatgaagaagaggaggaagatgattgtggcata 2184128  T
Q  226 gccatgagaatagag 240  Q
    |||||||||||||||    
T  2184127 gccatgagaatagag 2184113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 27214436 - 27214360
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 119  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || |||||||    
T  27214436 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt 27214360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 27234792 - 27234868
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 119  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || |||||||    
T  27234792 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt 27234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 28098590 - 28098725
Alignment:
Q  96 gtcacaaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaa 195  Q
    ||||||||||||| |  |||||||||||| ||||||||| ||||||||    || |||||  |||| ||||||||||||||||||||||| ||| | |||    
T  28098590 gtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaa 28098689  T
Q  196 gaggatgaggagacggatgattgaggcatagccatgaga 234  Q
    ||| | |||||    ||||||||  ||||||||||||||    
T  28098690 gagaaagagga---agatgattggagcatagccatgaga 28098725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 26811528 - 26811453
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagat 118  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||||||| ||||||||||||||| || ||||||    
T  26811528 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagat 26811453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27611128 - 27611315
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| | |||| ||  ||||||| ||||||||  ||||||||||||||     
T  27611128 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcag 27611227  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccatagga 188  Q
     ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || ||||||||||||||    
T  27611228 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatagga 27611315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27338191 - 27338289
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    |||||||||||||||||||||||||||| |||||||| | |  |||| || |||| || ||| ||  ||||||| |||||||||  |||||||||||||    
T  27338191 aaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtca 27338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27398931 - 27399029
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    |||||||||||||||||||||||||||| |||||||| | |  |||| || |||| || ||| ||  ||||||| |||||||||  |||||||||||||    
T  27398931 aaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtca 27399029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 28149429 - 28149375
Alignment:
Q  307 acttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattt 361  Q
    |||| |||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  28149429 actttagaggatccactgaccaaagaccgttgtgagttaaacttccttcccattt 28149375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27698620 - 27698825
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  27698620 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 27698719  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| || | |||||| |  || ||||||||||||||  | |||| |||    
T  27698720 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtgga 27698819  T
Q  201 tgagga 206  Q
    ||||||    
T  27698820 tgagga 27698825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 26617345 - 26617269
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 119  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||| ||| ||||||||||||||| || |||||||    
T  26617345 atttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 26723273 - 26723197
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 119  Q
    ||||| |||||||  ||||||||  ||||||| ||||||||||||| ||| ||||||||||||||| || |||||||    
T  26723273 atttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 31284349 - 31284205
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||||||||||||||| |||   ||||||| | | ||||| || |||| |||||| || || ||||| ||||||||  ||||||||||||||     
T  31284349 aaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcag 31284250  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcac 145  Q
     ||||||  |  ||||||| || |  |||||||| ||||||||||    
T  31284249 taagagccttgtagagattgccggtgaaaccataccgagtgtcac 31284205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 28781200 - 28781057
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  28781200 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 28781101  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtca 144  Q
     ||||||  |  ||||||| || | |||||| | ||||||||||    
T  28781100 taagagccttgtagagattgccggtaaaaccgtggcgagtgtca 28781057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25579780 - 25579682
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    ||||||||||| |||||||||||||||| |||||||| | | ||||| || |||| |||||| ||  | ||||| | |||||| || ||||||||||||    
T  25579780 aaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtca 25579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 26623037 - 26622871
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||||||||| || || |||  |||||||| | | ||||| || |||| |||||| || |  ||||| ||||||||  ||||||||||||||     
T  26623037 aaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcag 26622938  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 167  Q
     ||||||  |  ||||||||||||  ||||| || ||||||||||  ||||| || || ||||||||    
T  26622937 taagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 26729015 - 26728849
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||||||||| || || |||  |||||||| | | ||||| || |||| |||||| || |  ||||| ||||||||  ||||||||||||||     
T  26729015 aaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcag 26728916  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 167  Q
     ||||||  |  ||||||||||||  ||||| || ||||||||||  ||||| || || ||||||||    
T  26728915 taagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27593146 - 27593244
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    |||||||||||||||||||||||||||| |||||||| | | ||||| |  |||| ||||||  |  ||||||| ||||||||   |||||||||||||    
T  27593146 aaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtca 27593244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 25481802 - 25481705
Alignment:
Q  2 aaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    |||||||||| |||||||||||||||| |||||||| | | ||||| || |||| |||||| ||  | ||||| ||||| || || ||||||||||||    
T  25481802 aaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtca 25481705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26937143 - 26936954
Alignment:
Q  13 tcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctac 112  Q
    |||||||| ||||||| |||||||| | | |||||||| ||||| || |||||  ||||||| |||||||| || |||||    |||||||||||| |      
T  26937143 tcttcaattgccttgacaagtgatggtgtgatttcttctcctccatggagctccttgtcatcaatgaaggtgcgaattccacaatcacaaagagctttgt 26937044  T
Q  113 agagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatg 202  Q
    | ||||  |||  ||||    ||||||||||    ||||| || || |||||||||||||||||||||||||| ||| ||||||| ||||    
T  26937043 aaagatgaccaataaaatggaagcgagtgtcggtgcctctgaaactgaggaacacgtcataggtgaatccataagagaaggaagatgatg 26936954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 27229293 - 27229088
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||| ||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  27229293 aaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 27229194  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  ||||||| || | |||||| |  |||||||||   || ||||| ||||||||||| |  || ||||||||| ||||  | ||||||||    
T  27229193 taagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagagga 27229094  T
Q  201 tgagga 206  Q
     |||||    
T  27229093 agagga 27229088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27677740 - 27677801
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaag 62  Q
    |||||||||||||||||||||||||||| |||||||| | | ||||| || |||| ||||||    
T  27677740 aaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaag 27677801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27679007 - 27678946
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaag 62  Q
    |||||||||||||||||||||||||||| |||||||| | | ||||| || |||| ||||||    
T  27679007 aaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaag 27678946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 26848654 - 26848598
Alignment:
Q  68 tgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatttccag 124  Q
    ||||||| ||||||||||||||||| |||||| |||||||| || ||||||| ||||    
T  26848654 tgtcatcaatgaaggttcggattccattgtcagaaagagctttatagagattaccag 26848598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27706528 - 27706564
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  27706528 aaaatcctagactcttcaatggccttgagaagtgatg 27706564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 28139602 - 28139414
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||||||||| || |  ||||| | |  |||||| ||||||||||||||||| || ||||| || || ||  |||||||   |||||    
T  28139602 aaaatcctagattcttcaatggcttttacgagtgacggtgatatttcgtcacctccttgaagctccctatcatcaataaaagtgtggattccacagtcac 28139503  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggag 189  Q
     ||||||| |  ||||||||||||  |||||  | ||||||||||  ||||| ||||| || || || || || ||||| |||||||||    
T  28139502 gaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctctgaagctgagaaagacatcgtatgtgaagccataggag 28139414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 26884224 - 26884037
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||| ||||| ||||||||||||||||| ||||||| | | |||||    |||| | |||| |   | ||||| ||||||||  |||||||||||| |     
T  26884224 aaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatgattatcatcaatgaaggtgtggattcccttgttag 26884125  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccatagga 188  Q
     ||||||  |  ||||||||||||  |||||||| ||||||||||  ||||| || || |||||||| |  || ||||||||||||||    
T  26884124 taagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccatagga 26884037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26142926 - 26142828
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    ||||||||||| |||||||||||||||| |||||||| | | ||||| || |||| || ||| ||  | ||||| ||||| || || ||||||||||||    
T  26142926 aaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtca 26142828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 26949653 - 26949604
Alignment:
Q  70 tcatccatgaaggttcggattcccttgtcacaaagagctctacagagatt 119  Q
    ||||| |||||||||||||||||||||||| | |||||| || |||||||    
T  26949653 tcatcaatgaaggttcggattcccttgtcagagagagctttatagagatt 26949604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27604831 - 27605036
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||| || || ||||||||||||| ||||| || | | ||||| || |||| | |||| ||  | ||||| ||||||||  | ||||||||||||     
T  27604831 aaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcag 27604930  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  ||||||| || | |||||| || |||||||||   || ||||| ||||||||||| |  || |||||| |||||||  | ||||||||    
T  27604931 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 27605030  T
Q  201 tgagga 206  Q
    ||||||    
T  27605031 tgagga 27605036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26646540 - 26646504
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatg 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  26646540 aaaatcctagattcttcaatggccttgatgagtgatg 26646504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26752508 - 26752472
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatg 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  26752508 aaaatcctagattcttcaatggccttgatgagtgatg 26752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26861677 - 26861533
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||| ||||||||||||||||| |||   ||||||  | | ||||| || |||| |||||| || |  ||||||||||||||  | ||||||||||||     
T  26861677 aaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcag 26861578  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcac 145  Q
     ||||||  |  ||||||| || | ||||||||| ||||||||||    
T  26861577 taagagccttgtagagattaccggtaaaaccataccgagtgtcac 26861533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 58408 - 58683
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||| ||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58408 aaaatcctagactctttaatggccttgaaaagtgatggtgttatttcgtcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 58507  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  58508 aaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacgtgataggtgaatccataggagaaggaagagga 58607  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaatttggatgagtgtatat 276  Q
     || |||| |||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  58608 ggaagagatggatgattgaagcatagccatgacagtagagaataaaaaggaagtaagaatgtggatgagtgtatat 58683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 34786 - 34528
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||||| |||||||| ||||||||  |||||||||||| ||    
T  34786 aaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgac 34687  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||||||||| |||||||| | | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||    
T  34686 aaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggagaaagaagaaga 34587  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaa 259  Q
     | || ||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||    
T  34586 gggggggacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaa 34528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 27509 - 27252
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||| ||||| | ||| ||  | |||||||| | ||    
T  27509 aaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattcccttcttac 27410  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| | ||  |||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |     
T  27409 aaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacgtcataggtgaatccataagagaaggaagaagg 27310  T
Q  201 tgaggagacggatgattgaggcatagcc--atgagaatagagaataaaaaggaagtaa 256  Q
     |  ||||||||||||||| ||||||||  |||||||||||||||| |||||||||||    
T  27309 gggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaa 27252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 116857 - 116606
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||| | | ||||||| ||||||| |||||| ||| ||||||| |||||||| || |||| |||   ||    
T  116857 aaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctac 116758  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  116757 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T
Q  201 tgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaa 252  Q
     || |||| |||||||||| | | |||||||||| ||| ||||||| |||||    
T  116657 ggaagagatggatgattgaagtagagccatgagagtagtgaataaagaggaa 116606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 43027 - 42828
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||  ||||||||| |||| ||||||||||| |||||||| || |||||||| | ||    
T  43027 aaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttac 42928  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||| || |  |||||||||||| ||||||||| |||||||||| ||||||||| |||||||| || |||||||| || |||||||||  |||||||||    
T  42927 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagacatcataggtaaacccataggagagggaagagga 42828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3279749 - 3279555
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    |||||| | |||||||| |||||||||| |||||||  | | ||||| |||||||| |||||||| || ||||| |||||||| | || |||   |||||    
T  3279749 aaaatcatggactcttcgatggccttgacaagtgattgtgtgatttcatcacctccatgaagctccctatcatcaatgaaggtgcagaatccaccgtcac 3279650  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaa 195  Q
      | ||||||| |||||||||||| |||||||||||||||||||   || ||||| || | ||| |||||||||||||||||||| ||| |||||    
T  3279649 ttaaagctctatagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaactcaagaatacgtcataggtgaatccataagagaaggaa 3279555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 17993852 - 17993949
Alignment:
Q  43 atttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctacagagatttccagcaaaaccatagcgagt 140  Q
    ||||| |||||||  ||||||||| ||||||| ||||||||||| |||||||||||| |||||||| || ||||||| || |  |||||||| |||||    
T  17993852 atttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagt 17993949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 31903910 - 31903728
Alignment:
Q  3 aatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaa 102  Q
    |||||||||||||||||| ||||  | |||||||| | | ||||| |  |||| |||||| |||   || || || |||||  |||||||||| ||| ||    
T  31903910 aatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataa 31903811  T
Q  103 agagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccata 185  Q
    |||||| |  |||||||||||| ||||||||||||||||||    ||||||||||| |||||||| || ||||||||||||||    
T  31903810 agagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgtaggtgaatccata 31903728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 3548 - 3753
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  3548 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 3647  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| ||||||||||| |  || ||||||||||||||  | ||||||||    
T  3648 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagagga 3747  T
Q  201 tgagga 206  Q
    ||||||    
T  3748 tgagga 3753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 14481 - 14686
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || |||||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| ||||||||  ||||||||||||||     
T  14481 aaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcag 14580  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| |  |||||||||   || ||||| || | |||||| |  || ||||||||||||||  | |||| |||    
T  14581 taagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtgga 14680  T
Q  201 tgagga 206  Q
    ||||||    
T  14681 tgagga 14686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 5091082 - 5091279
Alignment:
Q  3 aatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaa 102  Q
    |||| |||| |||| ||||||||||| |||||| | | ||||||  || ||||  ||||||||||||||||| ||||||||  | ||||||||| |||      
T  5091082 aatcttagattcttgaatggccttgagaagtgacggtgttatttggtctcctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgt 5091181  T
Q  103 agagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
    ||||||  | |||||||||||| |||||| || ||||||||    |||||||| ||||| || ||||| ||||| ||||| |||||| | ||||||||    
T  5091182 agagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaagaaagacgtcgtaggtaaatccgtaggagaaagaagagga 5091279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 18731620 - 18731822
Alignment:
Q  4 atcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaa 103  Q
    |||||||||||||||||||| |||   ||||||| | | ||||| || |||| ||| || || | |||||| ||||||||  ||||||||||||||  ||    
T  18731620 atcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaa 18731719  T
Q  104 gagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatga 203  Q
    |||||||  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  || ||||||| ||||||  | |||||||||||    
T  18731720 gagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatga 18731819  T
Q  204 gga 206  Q
    |||    
T  18731820 gga 18731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 18655593 - 18655795
Alignment:
Q  4 atcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaa 103  Q
    ||||||||||||| |||||| |||   ||||||| | | ||||| || || | ||| ||||| | |||||| ||||||||  ||||||||||||||  ||    
T  18655593 atcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcagctcacggtcatcaatgaaggtgtggattcccttgtcagtaa 18655692  T
Q  104 gagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatga 203  Q
    ||||| |  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  || ||||||| ||||||  | |||||||||||    
T  18655693 gagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatga 18655792  T
Q  204 gga 206  Q
    |||    
T  18655793 gga 18655795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 18724201 - 18724403
Alignment:
Q  4 atcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaa 103  Q
    |||||||||||||||||||| |||   ||||||| | | ||||| || |||| ||| || || | |||||| ||||||||  ||||||||||||||  ||    
T  18724201 atcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaa 18724300  T
Q  104 gagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatga 203  Q
    ||||  |  ||||||  |||| |||||| |  ||||||||||  || || ||||| |||||||| |  || ||||||| ||||||  | |||||||||||    
T  18724301 gagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatga 18724400  T
Q  204 gga 206  Q
    |||    
T  18724401 gga 18724403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 18699516 - 18699718
Alignment:
Q  4 atcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaa 103  Q
    |||||||||||||||||||| |||   ||||||| | | ||||| || || | ||| || || | |||||| ||||||||  ||||||||||||||  ||    
T  18699516 atcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaa 18699615  T
Q  104 gagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatga 203  Q
    ||||| |  ||||||  |||| |||||| |  |||||||||   || || ||||| |||||||| |  || ||||||| ||||||  | |||||||||||    
T  18699616 gagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatga 18699715  T
Q  204 gga 206  Q
    |||    
T  18699716 gga 18699718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4797 - 5002
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| || ||||||||||||   || |||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  4797 aaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 4896  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagagga 200  Q
     ||||||  |  |||||||||| | |||||| | ||||||||||   || ||||| || |||||||| |  || ||||||||||||||  | ||||||||    
T  4897 taagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagagga 4996  T
Q  201 tgagga 206  Q
    ||||||    
T  4997 tgagga 5002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 13758 - 13901
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  13758 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 13857  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtca 144  Q
     ||||||  |  ||||||| || | |||||| | ||||||||||    
T  13858 taagagccttgtagagattgccggtaaaaccgtggcgagtgtca 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 102 - 213
Alignment:
Q  126 aaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatgaggagacggatgattgaggcata 225  Q
    |||||||| |||||||||| | ||||| || || |||||||||| ||||||||||   | ||||||||| || || ||||||   |||||||| ||||||    
T  102 aaaaccatggcgagtgtcagctcctctgaaacttaggaacacgttataggtgaat---ttggaggaggatgaagaagaggaggaagatgattgtggcata 198  T
Q  226 gccatgagaatagag 240  Q
    |||||||||||||||    
T  199 gccatgagaatagag 213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 16689070 - 16688867
Alignment:
Q  3 aatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaa 102  Q
    |||||| || |||||||| |||||||||||||||| | | ||||  |||||||  ||||| ||  ||||||| ||||||   |||||||||||||||||     
T  16689070 aatccttgagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacat 16688971  T
Q  103 agagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacacgtcataggtgaatccataggaggaggaagaggatg 202  Q
    |||||| |  | ||||| |||| ||||  | ||||||||||| | || | |||  | ||||| || |||||| ||||||| |||||| |||| ||||| |    
T  16688970 agagctttgtacagattaccagtaaaatgaaagcgagtgtcatcgccacaaaaatttaggaaaacatcatagttgaatccgtaggagaaggatgaggaag 16688871  T
Q  203 agga 206  Q
    ||||    
T  16688870 agga 16688867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 43 - 209
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  43 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 142  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 167  Q
     ||||||  |  ||||||| || | |||||| | ||||||||||   || ||||| |||||||||||    
T  143 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 7586 - 7420
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcac 100  Q
    ||||||||||| ||||| ||||||||||  ||||||| | | ||||| || |||| |||||| ||  ||||||| |||||||||  |||||||||||||     
T  7586 aaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcag 7487  T
Q  101 aaagagctctacagagatttccagcaaaaccatagcgagtgtcaccacctctaaagctaaggaacac 167  Q
     ||||||  |  ||||||| || | |||||| | ||||||||||   || ||||| |||||||||||    
T  7486 taagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 268470 - 268568
Alignment:
Q  1 aaaatcctagactcttcaatggccttgataagtgatgatattatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 99  Q
    ||||||||||||||||||||||| |||   ||||||| | | ||||| || |||| |||||| || |  ||||| ||||||||  ||||||||||||||    
T  268470 aaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtca 268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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