View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_low_8 (Length: 267)
Name: NF13649_low_8
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 40 - 253
Target Start/End: Original strand, 2599291 - 2599509
Alignment:
| Q |
40 |
cattggcgggcaaatttccactactgcatgca-----caaaatataagtttgatgattatgacaagtacaatcatcaaacgaaagtttgccaaatttatt |
134 |
Q |
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| T |
2599291 |
cattggcgggcaaaattccactactgcatgcattgcacaaaatataagtatgatgacgatgacaagtacaatcatcaaacgaaagtttgccaaatttatt |
2599390 |
T |
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| Q |
135 |
tattaaaattaaaagaacaaagttactagatgaggcaaacaggcttaccccatttattgacatgacacgtatcccacaccaaaatagatatagtgcatat |
234 |
Q |
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| T |
2599391 |
tattaaaattaaaagaacaaagttactcgatgaggcaaacaggcttaccctatttattgacatgacacatatcccacaccaaaatagatatagtgcatat |
2599490 |
T |
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| Q |
235 |
ttgaatcgatgatgaattt |
253 |
Q |
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||||||||||||||||||| |
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| T |
2599491 |
ttgaatcgatgatgaattt |
2599509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 2591610 - 2591768
Alignment:
| Q |
96 |
acaagtacaatcatcaaacgaaa-gtttgccaaatttatttattaaaattaaaagaacaaagttactagatgaggcaaacaggcttaccccatttattga |
194 |
Q |
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|||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| | |
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| T |
2591610 |
acaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagttgctagatgaggcaaacatgcttgccccatttattaa |
2591709 |
T |
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| Q |
195 |
catgacacgtatcccacaccaaaatagatatagtgcatatttgaatcgatgatgaattt |
253 |
Q |
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| T |
2591710 |
aatgatatacaccccacactaaaatagatataatgcatatttgaattgatgatgaattt |
2591768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 2577862 - 2578013
Alignment:
| Q |
96 |
acaagtacaatcatcaaacgaaagtttgccaaatttatttattaaaattaaaagaacaaagttactagatgaggcaaacaggcttaccccatttattgac |
195 |
Q |
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|||||| |||| |||||| ||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||||| | |
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| T |
2577862 |
acaagtccaataatcaaatgaaagttcgccaaatttatttattaaaattaaaacaacaaaattgctagatgaggcaaacatgcttaccccatttattaaa |
2577961 |
T |
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| Q |
196 |
atgacacgtatcccacaccaaaatagatatagtgcatatttgaatcgatgatgaattt |
253 |
Q |
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| T |
2577962 |
ataacac--atctcacacca----agatatagtgcagatttgaattgagggtgaattt |
2578013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 2607877 - 2607993
Alignment:
| Q |
92 |
tatgacaagtacaatcatcaaacgaaagtttgccaaatttatttattaaaattaaaagaacaaagttactagatgaggcaaacaggcttaccccatttat |
191 |
Q |
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||||||||| |||||||||| | ||||||| |||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
2607877 |
tatgacaagcacaatcatcacatgaaagttcgccaaatttatt----aagattaaaagaacaaagttgctaaatgaggcaaacaggcttacccca-ttat |
2607971 |
T |
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| Q |
192 |
tgacatgacacgtatcccacac |
213 |
Q |
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| | || |||| |||||||||| |
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| T |
2607972 |
ttaaataacacatatcccacac |
2607993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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