View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13649_low_9 (Length: 260)
Name: NF13649_low_9
Description: NF13649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13649_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 33343464 - 33343624
Alignment:
| Q |
70 |
ttctttctttcgatcacatgaacaatcgtaagtggtggtatttttatgtaaggcaagactatatagttttaatgctcaaataaccactaattcgcctaat |
169 |
Q |
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| T |
33343464 |
ttctttctttcgatcacataaacaatcgtaagtggtggtatttttatgtaaggcaagactatatagttttaatgctcaaataaccactaattcgcctaat |
33343563 |
T |
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| Q |
170 |
agttaggtcggtcgccatgtgtggtcacgttgacattttatagaaaattgatcatgtgaaa |
230 |
Q |
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| T |
33343564 |
agttaggtcggtcgccatgtgtggtcacgttgacattttatagaaaattgattatgtgaaa |
33343624 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33343403 - 33343442
Alignment:
| Q |
1 |
cttattacggcaccccatacatattcgctacttcacgtag |
40 |
Q |
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| T |
33343403 |
cttattacggcaccccatacatattcgctacttcacgtag |
33343442 |
T |
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