View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_12 (Length: 509)
Name: NF1364_high_12
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 96 - 503
Target Start/End: Original strand, 4082755 - 4083164
Alignment:
| Q |
96 |
tttccatttgatcatttcccaaaaccatat--atatttctataggaatttgaattccccagacacccttcaatcatcatttgccaagaaacaaaaccatt |
193 |
Q |
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| T |
4082755 |
tttccatttgatcatttcccaaaactatatatatatttctataggaatttcaattccccagacacccttcaatcatcatttgccaagaaacaaaaccatt |
4082854 |
T |
|
| Q |
194 |
aaatagcaagaacaagacaaagaacatagaacaaattgtcagcaatagaaatcacttacatagataatatcttttgtcatgggaagaagattgccctatg |
293 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4082855 |
aaatcgcaggaacaagacaaagaacatagaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatg |
4082954 |
T |
|
| Q |
294 |
acaatgccaataattcattgataggtccatttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgt |
393 |
Q |
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| T |
4082955 |
acaatgccaacaatttattaataggtccatttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgt |
4083054 |
T |
|
| Q |
394 |
tcgatttcgaagaagaaaattgacgccgccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaata |
493 |
Q |
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| T |
4083055 |
tcgatttcgaagaagaaaattgacgccgccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaata |
4083154 |
T |
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| Q |
494 |
ttcatctcac |
503 |
Q |
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||||| |||| |
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| T |
4083155 |
ttcatgtcac |
4083164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 4082689 - 4082729
Alignment:
| Q |
30 |
cctacaactccaaaatttgagcaaccatatacggttttctt |
70 |
Q |
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| T |
4082689 |
cctacaactccaaaatttgagcaaccatatacggttttctt |
4082729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
364 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
407 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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