View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_14 (Length: 504)
Name: NF1364_high_14
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 50 - 496
Target Start/End: Original strand, 52490322 - 52490764
Alignment:
| Q |
50 |
aaaaaataaccaagaaaaataaaggaagtactactactcacaaagaagttctgacatgtcaagaatgataaacgaaagaaaattcaagtggttaatgaaa |
149 |
Q |
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| T |
52490322 |
aaaaaataaccaagaaaaataaaggaagtactactactcacaaagaagttctgacatgtcaagaatgataaacgaaa----attcaagtggttaatgaaa |
52490417 |
T |
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| Q |
150 |
cttgaggaaatagagatagaaacaaatttaaatatttctaagctttattgatattttggatgaaggatagtacataggttgggtcaatcaatcatcaatt |
249 |
Q |
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| T |
52490418 |
cttgaggaaatagagatagaaacaaatttaaatatttctaagctttattgatattttggatgaagtatagtacataggttgggtcaatcaatcatcaatt |
52490517 |
T |
|
| Q |
250 |
acatgtagcagacaagaaagggtgtcggcaaaagacaaaattaatgcaaaaattagccatgttgtcaaaggcaatatataatgtaaaattgatagtatga |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490518 |
acatgtagcagacaagaaagggtgtcggcaaaagacaaaattaatgcaaaaattagccatgttgtcaaaggcaatatataatgtaaaattgatagtatga |
52490617 |
T |
|
| Q |
350 |
atgttctgtatcatatatttccttcattcatatatggatatggatgcttcacctcacatcatacttcnnnnnnnnnnnnnnnnnnnnnnnntctatgagt |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52490618 |
atgttctgtatcatatatttccttcattcatatatggatatggatgcttcacctcacatcatacttcaaaaatcaaaaataaaataaaaaatctatgagt |
52490717 |
T |
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| Q |
450 |
tttgattctggacctctttgtcacttgccaccttgtgcttctgtggt |
496 |
Q |
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| T |
52490718 |
tttgattctggacctctttgtcacttgccaccttgtgcttctgtggt |
52490764 |
T |
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