View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_15 (Length: 503)
Name: NF1364_high_15
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 28788564 - 28788258
Alignment:
| Q |
30 |
caatttttcagagtccaacacctttacattattacataaattatttcatttgaatattctttgtttgacttttaatttaattatttgtagaaatctaatt |
129 |
Q |
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| T |
28788564 |
caatttttcagagtccaacacctttacattattacataaattatttcatttgaatattctttgtttgacttttaatttaattatttgtagaaatctaatt |
28788465 |
T |
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| Q |
130 |
ttgaaatattagacggaaatctaattgttttgaaactttgtgatttctcaattattttttagataattttcttttataaccaagaaatgcaattgcgaaa |
229 |
Q |
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| T |
28788464 |
ttgaaatattagacggaga-------------aaactttgtgatttctcaattattttttagataattt-cttttataagcaagaaatgcacttgcgaaa |
28788379 |
T |
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| Q |
230 |
aagaataaactgaagggacataaatctaatccatgaaagaaagtagataaggaaaatgtaaataaaaaagcttttcatattattaaataaggatttcatt |
329 |
Q |
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| T |
28788378 |
aagaataaactgaagggacataaatctaatcgatgaaagaaagaagacaagaaaaatataaataaaaaagcgtttca---tattaaataaggatttcatt |
28788282 |
T |
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| Q |
330 |
cctacattctcaaatatagtcttt |
353 |
Q |
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| T |
28788281 |
cctacattctcgaatatagtcttt |
28788258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 15139650 - 15139687
Alignment:
| Q |
320 |
ggatttcattcctacattctcaaatatagtctttctct |
357 |
Q |
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| T |
15139650 |
ggatttcattcctatattctcaaatataatctttctct |
15139687 |
T |
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