View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_21 (Length: 404)
Name: NF1364_high_21
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 70 - 395
Target Start/End: Original strand, 44793204 - 44793532
Alignment:
| Q |
70 |
caccatataaaattgataaagaaggataacacttcacgctgtcctctcggttttaataacttagtctagataaggatggtaatcaagtcaataaaaataa |
169 |
Q |
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| T |
44793204 |
caccatataaaattgataaagaaggataacacttcacgctgtcctctcggtttgaataacttagtctagataaggatggtaatcaagtcaataaaaataa |
44793303 |
T |
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| Q |
170 |
tgaacctatgacaagaagttagtccagtcnnnnnnnngaagacaaatatttaacagtttatgcatacttcttcatgtttgtttcaaaaggtgttcacaag |
269 |
Q |
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| T |
44793304 |
tgaacctatgacaagaagttagtccagtcaaaaaaaagaagacaaatatttaacagtttatgcatacttcttcgtgtttgtttcaaaaggtgtccacaag |
44793403 |
T |
|
| Q |
270 |
caatagtcaacttgatctattcaaccaacgattcaacccaatctaaagcatttgatt---nnnnnnnnntgtttgtttgtttctttgtaccaaaaataaa |
366 |
Q |
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| T |
44793404 |
caatagtcaacttgatctattcaaccaacgattcaacccaatctaaagcatttgattaaaaaaaaaaaatgtttgtttgtttctttgtaccaaaaataaa |
44793503 |
T |
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| Q |
367 |
ggaacgatgtaacactttcacctctctgc |
395 |
Q |
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| T |
44793504 |
ggaacgatgtaacactttcacctcactgc |
44793532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4600730 - 4600687
Alignment:
| Q |
16 |
ttgttttagcataattggtctcttgtgtaaaacattagtttaca |
59 |
Q |
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| T |
4600730 |
ttgttttagcataattggtctcttgtgtaaaacattagtttaca |
4600687 |
T |
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