View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_23 (Length: 397)
Name: NF1364_high_23
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_23 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 91 - 310
Target Start/End: Complemental strand, 40887107 - 40886886
Alignment:
| Q |
91 |
gaatggaaagttgatgggaacatctcaatgctccttagttggcctttaaactatctcaccaaaaagttatttattcaagtcaaaataatgcttaccagaa |
190 |
Q |
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| T |
40887107 |
gaatggaaagttgatgggaacatctcaatgctccttagttggcctttaaactatctcaccaaaaagttatttattcaagtcaaaataatgcttaccagaa |
40887008 |
T |
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| Q |
191 |
ataattatgggtgtggtgaattaatgcaactatattgttgctctatctgtgtgtttgtctctcggtaattaataggtattcacaagttggt--ttttgtg |
288 |
Q |
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| T |
40887007 |
ataattatgggtgtggtgaattaatgcaactatattgttgctctatctatgtgtttgtctctcggtaattaataggtattcacaagttggtttttttggg |
40886908 |
T |
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| Q |
289 |
gatcagttgagcttgtaaacta |
310 |
Q |
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||| |||||||||||||||||| |
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| T |
40886907 |
gattagttgagcttgtaaacta |
40886886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 6966326 - 6966394
Alignment:
| Q |
11 |
agaatatgagagcaaaagtcagaatttaatgtccatatcgcatattcatagtttaaaatctgcagaagg |
79 |
Q |
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| T |
6966326 |
agaatatgagagcaaaagtcagaatttaatgtccatatcgcatattcatagtttaaaatctgcagaagg |
6966394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 40886611 - 40886551
Alignment:
| Q |
309 |
tagtattttataatagggtcatgttaatttgtgtatatagggcacatgttaagcattaatt |
369 |
Q |
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| T |
40886611 |
tagtattttataatagggtcatgttaatttgtgtccatagggtacatgttaagcattaatt |
40886551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 32227620 - 32227574
Alignment:
| Q |
323 |
agggtcatgttaatttgtgtatatagggcacatgttaagcattaatt |
369 |
Q |
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| T |
32227620 |
agggtcgtgttaatttgtgcttttagggcacatgttaagcattaatt |
32227574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 38773706 - 38773649
Alignment:
| Q |
310 |
agtattttataatagggtcatgttaatttgtgtatatagggcacatgttaagcattaa |
367 |
Q |
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| T |
38773706 |
agtatttcaaaatagggtcatgttaacttgtgcccttagggcacatgttaagcattaa |
38773649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 972592 - 972548
Alignment:
| Q |
325 |
ggtcatgttaatttgtgtatatagggcacatgttaagcattaatt |
369 |
Q |
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| T |
972592 |
ggtcatgttaacttgtgcttttagggcacatgttaagcattaatt |
972548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 47370284 - 47370329
Alignment:
| Q |
323 |
agggtcatgttaatttgtgtatatagggcacatgttaagcattaat |
368 |
Q |
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| T |
47370284 |
agggtcatgttaacttgtgtaattatggcacatgttaagcattaat |
47370329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 18023757 - 18023797
Alignment:
| Q |
321 |
atagggtcatgttaatttgtgtatatagggcacatgttaag |
361 |
Q |
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| T |
18023757 |
atagggtaatgttaatttgtgtatttagagcacatgttaag |
18023797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 21415 - 21371
Alignment:
| Q |
324 |
gggtcatgttaatttgtgtatatagggcacatgttaagcattaat |
368 |
Q |
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| T |
21415 |
gggtcatattaacttgtgtctttagggcacatgttaagcattaat |
21371 |
T |
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