View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_high_27 (Length: 384)
Name: NF1364_high_27
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 375
Target Start/End: Original strand, 46227484 - 46227819
Alignment:
| Q |
31 |
ttaatccctcccttagattcccaattcgtacattattagtctctgtcttagtttgta-------gtactagtataactccgtttggctttttagttgaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227484 |
ttaatccctcccttagattcccaattcgtacattattagtctctgtcttagtttgtactttgtagtactagtataactccgtttggctttttagttgaac |
46227583 |
T |
|
| Q |
124 |
acgggttcatgaaaattgcaatgaaaagggatcgcatccagcacagactcacagtgtgtacgcaaaaagatcaatatgaatgattaattatttgaggcag |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46227584 |
acgggttcatgaaaattgcaatgaaaagggatcgcatccagcacagactcacagtgtgtacgcaaaaagatcaat----------------ttgaggcag |
46227667 |
T |
|
| Q |
224 |
tggggttagaaaactagtattaatttataagaataagaatatataattatttgatgatttgaatgttgatttatagcaagacatacagaactggaaatga |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227668 |
tggggttagaaaactagtattaatttataagaataagaatatataattatttgatgatttgaatgttgatttatagcaagacatacagaactggaaatga |
46227767 |
T |
|
| Q |
324 |
gggagggggaccattaattatcatcatcatcactcatatgcatgagaattat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227768 |
gggagggggaccattaattatcatcatcatcactcatatgcatgagaattat |
46227819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University